 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.4622s0007.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 160aa MW: 18108.3 Da PI: 7.9691 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.4622s0007.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.3 | 6.1e-19 | 13 | 66 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+ ++t+eq+++Le++F n+++ + + +L+++lgL++rqV vWFqN+Ra+ k
Cagra.4622s0007.1.p 13 KKKRLTQEQVRQLEKCFTVNKKLEPDLKIQLSNQLGLPQRQVAVWFQNKRARSK 66
55679***********************************************99 PP
|
| 2 | HD-ZIP_I/II | 101.4 | 7.9e-33 | 12 | 104 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rl++eqv++LE++F+ ++kLep+ K +l+++Lgl +rqvavWFqn+RAR kt+ lE ++ +L+++++a +++++Le++v+ L++e
Cagra.4622s0007.1.p 12 NKKKRLTQEQVRQLEKCFTVNKKLEPDLKIQLSNQLGLPQRQVAVWFQNKRARSKTQSLELQHCTLQSKLEAALSDKAKLERQVQFLQDE 101
59**************************************************************************************** PP
HD-ZIP_I/II 91 lke 93
lk+
Cagra.4622s0007.1.p 102 LKR 104
986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009646 | Biological Process | response to absence of light |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 160 aa
Download sequence Send
to blast |
MENSESESQS GNKKKRLTQE QVRQLEKCFT VNKKLEPDLK IQLSNQLGLP QRQVAVWFQN 60
KRARSKTQSL ELQHCTLQSK LEAALSDKAK LERQVQFLQD ELKRSRNQLA LLRSHGSPAD 120
NSYLGSCEEE GHDDQVVVFD ELYACFVSNG HGSSSTSWV*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB007644 | 1e-144 | AB007644.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19P17. |
| GenBank | AK229211 | 1e-144 | AK229211.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-49-M21. |
| GenBank | BT015927 | 1e-144 | BT015927.1 Arabidopsis thaliana At5g53980 mRNA, complete cds. |
| GenBank | BT021920 | 1e-144 | BT021920.1 Arabidopsis thaliana At5g53980 gene, complete cds. |
| GenBank | CP002688 | 1e-144 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
