 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.4344s0001.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
NAC |
| Protein Properties |
Length: 275aa MW: 30950.2 Da PI: 6.5217 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.4344s0001.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 90.9 | 2.1e-28 | 5 | 79 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s ++e++g+k+tLvf+ grapkg +t+W+mhey +
Cagra.4344s0001.1.p 5 KSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERNVKS-GSEVIGTKRTLVFHIGRAPKGGRTEWLMHEYCM 79
4678**************************************.9******************************86 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
KSIVKSDSEW FFFCARGKKY PHGSQNRRAT KMGYWKATGK ERNVKSGSEV IGTKRTLVFH 60
IGRAPKGGRT EWLMHEYCMI GVSLDALVIC RLRRNTEFQG ATIQKSPQPN TLPEKHVNTQ 120
NDAISESISD WENMVDFYLS SESGQELLSE IAESSQSSQN PQVPSEDDFY ADILRDEIVK 180
LDDPAVSGNT LINVPRLQAE SNTTRVLPLP NMVDIQMQSL LQKLPLQNDT GEENNISMSN 240
CFIGIYSIKS INRARWDVVA WVLVMIAVLV FYLV*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 4e-23 | 6 | 95 | 72 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 4e-23 | 6 | 95 | 72 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 4e-23 | 6 | 95 | 72 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 4e-23 | 6 | 95 | 72 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 4e-23 | 6 | 95 | 72 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 4e-23 | 6 | 95 | 72 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 4e-23 | 6 | 95 | 72 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 4e-23 | 6 | 95 | 72 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}. |
