PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4290s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 245aa MW: 28177.3 Da PI: 6.7232 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.4 | 1.1e-11 | 131 | 182 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 ++ +r+++NRe+A+rsR RK+ i++L++ v L+ eN++L ++l + Cagra.4290s0007.1.p 131 RKRKRMESNRESAKRSRMRKQSHIDNLRNQVNRLDLENRELGNRLRLVLHQL 182 67899************************************98877655555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.2E-11 | 120 | 184 | No hit | No description |
SMART | SM00338 | 2.9E-14 | 127 | 191 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.898 | 129 | 192 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.59E-10 | 131 | 182 | No hit | No description |
Pfam | PF00170 | 2.4E-9 | 131 | 176 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.22E-17 | 132 | 183 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 134 | 149 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MLSTVPAFSF SEPGLVNQFS GFQTGFTSWE WDCSDLFSVD HLSLEPEPAV PSPCYGESEA 60 GSVRTNSGNH NMKTGSDEFC TGFDDANQSD GLGKEPGSDD HKQLTAITNF GSGEQNHDRK 120 KLTQPEMTDE RKRKRMESNR ESAKRSRMRK QSHIDNLRNQ VNRLDLENRE LGNRLRLVLH 180 QLQRVNTDNN RLVTEQDILR LRLSEMRRVL IVRQLQQQQQ WELHNRRMIM TEQNHPSSII 240 DQLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 134 | RKKLTQPEMTDERKRKR |
2 | 143 | 148 | KRSRMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4290s0007.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493725 | 1e-151 | AB493725.1 Arabidopsis thaliana At4g37730 gene for hypothetical protein, partial cds, clone: RAAt4g37730. | |||
GenBank | AL035709 | 1e-151 | AL035709.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T28I19 (ESSA project). | |||
GenBank | AL161592 | 1e-151 | AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88. | |||
GenBank | CP002687 | 1e-151 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286269.2 | 1e-172 | bZIP transcription factor RISBZ4 | ||||
TrEMBL | R0FAV8 | 1e-171 | R0FAV8_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.4290s0007.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7855 | 18 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37730.1 | 1e-112 | basic leucine-zipper 7 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4290s0007.1.p |