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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.4222s0009.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
TCP |
| Protein Properties |
Length: 327aa MW: 34443.9 Da PI: 7.5055 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.4222s0009.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 125.9 | 4.2e-39 | 77 | 162 | 3 | 87 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87
+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ +a++s+s++++++
Cagra.4222s0009.1.p 77 PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaSAAASVSNHHHQGG 162
6999****************************************************************999666666666665544 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0008361 | Biological Process | regulation of cell size |
| GO:1900056 | Biological Process | negative regulation of leaf senescence |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MDPKNLNRHQ VPNFLNPSSQ PPPRNQGMGL DDDNNKDENR KSSSTTEIKD FQIVVSASSD 60
KEPNNSNTKK SQNQLGPKRS SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGHKSDGE 120
TIQWLLQQAE PSIIAATGSG TIPASALASA AASVSNHHHQ GGSLTAGLMI SHDLVDGGGS 180
SSGRPPNWGI GGGEGASRSN LPTGLWPNVA GFGSGVPTTG LMSEAAGYRI GFPGFDFPGV 240
GPMSFASILG GAGGNTHQMP GLELGLSQEG NVGVLNPQSF TQLYQQMGQA QAQAQAQGRV 300
LQHIHHNHED HQQESGEKDD SQGSGR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB026649 | 0.0 | AB026649.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOJ10. |
| GenBank | AJ291749 | 0.0 | AJ291749.1 Arabidopsis thaliana mRNA for putative transcription factor (PCF1 gene). |
| GenBank | AK118178 | 0.0 | AK118178.1 Arabidopsis thaliana At3g27010 mRNA for unknown protein, complete cds, clone: RAFL19-49-P20. |
| GenBank | BT006043 | 0.0 | BT006043.1 Arabidopsis thaliana clone U50934 unknown protein (At3g27010) mRNA, complete cds. |
| GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
| Publications
? help Back to Top |
- Zhu P, et al.
Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
[PMID:27708161] - Wu JF, et al.
LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
Nat Commun, 2016. 7: p. 13181
[PMID:27734958] - Guan P, et al.
Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
[PMID:28202720] - Guan P
Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
Front Plant Sci, 2017. 8: p. 1697
[PMID:29033968] - Zhang N, et al.
MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
Plant J., 2018. 93(1): p. 66-78
[PMID:29086441] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
Plant Physiol., 2018. 176(2): p. 1694-1708
[PMID:29133375] - Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
Microbes Environ., 2017. 32(4): p. 314-323
[PMID:29187692]
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