PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4138s0011.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HRT-like
Protein Properties Length: 483aa    MW: 54669.2 Da    PI: 9.2213
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4138s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like57.62.1e-18278308131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          +CGvile+G +C+r+PvkgRKRC eHKG+R+
  Cagra.4138s0011.1.p 278 VCGVILENGGFCNRSPVKGRKRCIEHKGQRV 308
                          7*****************************7 PP
2HRT-like45.21.5e-14340369231
             HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          CGvil d   C++ +v+gRKRCe HKGmRi
  Cagra.4138s0011.1.p 340 CGVILPDMESCSKRAVQGRKRCEDHKGMRI 369
                          *****************************7 PP
3HRT-like30.65.6e-10412438228
             HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                          C ++++ G +C+r+P kg KRC++HK 
  Cagra.4138s0011.1.p 412 CEATTKKGLPCTRSPPKGSKRCWQHKE 438
                          999***********************7 PP
4HRT-like55.41e-17452481231
             HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          CGv+l +G +C+r+PvkgRKRCeeHKGmRi
  Cagra.4138s0011.1.p 452 CGVKLCNGLTCERSPVKGRKRCEEHKGMRI 481
                          *****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEFGDGVSFA VVPTVFKRED YKRTKHDSVF SNWQVLIGSN DWEDFKNGKD GVCRYRVQNL  60
PRKSFPGLYE LGAAVIDSDK GRKLEPDDVL AAYLGQAESV RSRLQRYGRS GAHLRNVYSL  120
FDCETVESPV KKAATGGLFE DIFSKGGSIL YRWAPMGSKR VAEATEGMLL STFDYAWNKG  180
SNGERRQLDL LKKLGDREFM SKRKSGISRM LFPFLRNQVG IRIKGEKHVL KEERKLSSNV  240
DEEKSTNFLS SILKLTRSRP QPVSDRFDEI DGSCTDSVCG VILENGGFCN RSPVKGRKRC  300
IEHKGQRVCR ISPQKQTPPP NLEIFTGQDH HNHKDSDVRC GVILPDMESC SKRAVQGRKR  360
CEDHKGMRIN AFLFLLNQTD REKTVKDDNS SDLESHKELN DEEEEEALTR FCEATTKKGL  420
PCTRSPPKGS KRCWQHKEKT SPICFQPEII ACGVKLCNGL TCERSPVKGR KRCEEHKGMR  480
IT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4138s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133920.0AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280390.10.0protein EFFECTOR OF TRANSCRIPTION 2 isoform X1
SwissprotF4K9330.0ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLR0GQ090.0R0GQ09_9BRAS; Uncharacterized protein
STRINGCagra.4138s0011.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.10.0effector of transcription2