PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4137s0013.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 102aa    MW: 12353.1 Da    PI: 10.6882
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4137s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.97.1e-26255255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          r+rWt + H+ Fv+ave+LGG+ +AtPktil+ m+  ++t +++kSHLQ+YR 
  Cagra.4137s0013.1.p  2 SRMRWTDDRHHLFVQAVESLGGERNATPKTILNRMSARDITTSQIKSHLQMYRK 55
                         69***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.224158IPR017930Myb domain
TIGRFAMsTIGR015571.4E-23257IPR006447Myb domain, plants
SuperFamilySSF466891.28E-15258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-22257IPR009057Homeodomain-like
PfamPF002491.3E-7354IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MSRMRWTDDR HHLFVQAVES LGGERNATPK TILNRMSARD ITTSQIKSHL QMYRKKKERD  60
SIKERRMIRQ VNQRQSQQYV QIYENLRDDV QIEERFLYIL N*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4137s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635981.18e-61probable transcription factor KAN2
SwissprotQ0J2353e-15ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLR0HDE73e-37R0HDE7_9BRAS; Uncharacterized protein
STRINGCagra.4137s0013.1.p1e-68(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.16e-22G2-like family protein