PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cagra.4137s0010.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

G2-like

Protein Properties

Length: 126aa MW: 15271.9 Da PI: 10.0993

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4137s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	66.4	5e-21	15	66	2	53
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 pr++Wt + H Fv++ve LGG+e A Pk+il+lm+ + +tl++vkSHLQ + Cagra.4137s0010.1.p 15 PRMQWTDDRHYLFVQVVEILGGEELAKPKKILNLMGANNITLSQVKSHLQVF 66 8*************************************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-19	11	68	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-14	15	69	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-19	15	69	IPR006447	Myb domain, plants
Pfam	PF00249	6.1E-6	16	64	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MRDSIVRSYI RSNMPRMQWT DDRHYLFVQV VEILGGEELA KPKKILNLMG ANNITLSQVK 60 SHLQVFIIHT HIIYMYRNKK KEKAKQEMRM MWQMYHRQSQ QYVQIYENLI RDVVQIEERF 120 LDILN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4137s0010.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023635980.1	5e-71	putative Myb family transcription factor At1g14600
TrEMBL	R0HDE7	1e-71	R0HDE7_9BRAS; Uncharacterized protein
STRING	Cagra.4137s0010.1.p	1e-87	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04580.1	8e-40	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cagra.4137s0010.1.p