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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.4137s0009.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
G2-like |
Protein Properties |
Length: 221aa MW: 25411.2 Da PI: 4.5287 |
Description |
G2-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.4137s0009.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 102.5 | 2.7e-32 | 15 | 68 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
prlrW+++LH++Fv+aveqLGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+
Cagra.4137s0009.1.p 15 PRLRWNSDLHNSFVQAVEQLGGENRATPKMVLQLMDVKGLTISHVKSHLQMYRS 68
8****************************************************7 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 221 aa
Download sequence Send
to blast |
MKTPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA TPKMVLQLMD VKGLTISHVK 60 SHLQMYRSMK LEESMQEEIL ARRSVRVTGQ VTWWQFQQYL HNYQRLRGNA NFFQNQQREE 120 EEMYEKIITF GESSNETDQE VPSDYFTCKS LYESSTAQLN KTRDDDENGG VVAAIDDDDN 180 VLDEYGDVDD DNDVTLSLNS IKASKNEEEL SLELTLGLKA *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
6j4k_A | 4e-18 | 16 | 70 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-18 | 16 | 70 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-18 | 16 | 70 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-18 | 16 | 70 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-18 | 16 | 70 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-18 | 16 | 70 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-18 | 16 | 70 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-18 | 16 | 70 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF074021 | 5e-47 | AF074021.1 Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence. |
GenBank | AL161501 | 5e-47 | AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13. |
GenBank | CP002687 | 5e-47 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |