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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.4122s0002.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
HD-ZIP |
Protein Properties |
Length: 836aa MW: 91658.1 Da PI: 6.368 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.4122s0002.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 16 | 74 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+
Cagra.4122s0002.1.p 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
5679*****************************************************97 PP
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2 | START | 169.1 | 3e-53 | 160 | 368 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89
+aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+++d++ W + ++++++++v+ ++ g
Cagra.4122s0002.1.p 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngG 248
7899******************************************************.7777777777****************9999* PP
EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
+++l +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S+ s+q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl++
Cagra.4122s0002.1.p 249 TVELLYMQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSmplVQNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEAC 338
*************************************************999999*********************************** PP
XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
START 176 lphwllrslvksglaegaktwvatlqrqce 205
+++++lr+l++s + ++kt++a+l+++++
Cagra.4122s0002.1.p 339 SVPEVLRPLYESPKVLAQKTTMAALRQLKQ 368
**************************9986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 836 aa
Download sequence Send
to blast |
MAMSCKDKLG CLDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ 60 IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV HENSYFRQHT 120 PNPLLPAKDT SCESVVTSGQ HQLASQNPQR DASPAGLLSI AEETLAEFLS KATGTAVEWV 180 QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLEPTRVA EIVKDRPSWF RECRAVDVMN 240 VLPTANGGTV ELLYMQLYAP TTLAPPRDFW LLRYTSVLED GSLVVCERSL KSTQNGPSMP 300 LVQNFVRAEM LPSGYLIRPC DGGGSIIHIV DHMDLEACSV PEVLRPLYES PKVLAQKTTM 360 AALRQLKQIA QEVTQTNSSV NGWGRRPAAL RALSQRLSRG FNEAVNGFTD EGWSVIGDSM 420 DDVTITVNSS PDKLMGLNLT FSNGFAPVSS VVLCAKASML LQNVPPAILL RFLREHRSEW 480 ADNNIDAYLA AAVKVGPCSA RVGGFGGQVI LPLAHTIEHE EFMEVIKLEG LGHSPEDAIV 540 PRDIFLLQLC SGMDESAVGT CAELIFAPID ASFADDAPLL PSGFRIIPLD SAKEVSSPNR 600 TLDLASALEI GSAGTKASSD QSGNSTCARS VMTIAFEFGI ESHMQEHVAS MARQYVRGII 660 SSVQRVALAL SPSHISSQVG LRTPLGTPEA QTLARWICQS YRGYMGVELL KSNSEGNESI 720 LKNLWHHTDA IICCSMKALP VFTFANQAGL DMLETTLVSL QDISLEKIFD DNGRKTLCSE 780 FPQIMQQGFA CLQGGICLSS MGRPVSYERA VAWKVLNEEE NAHCICFVFI NWSFV*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ439449 | 0.0 | AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene). |
GenBank | AY060556 | 0.0 | AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds. |