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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cagra.4091s0015.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
NAC |
| Protein Properties |
Length: 319aa MW: 36024.3 Da PI: 8.5861 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.4091s0015.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 177.8 | 3e-55 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhPtdeel+++yL +k+++++++ ++i++vd++k+ePw+Lp+k+k + kewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
Cagra.4091s0015.1.p 16 LPPGFRFHPTDEELISYYLVNKIADQNFTG-KAIADVDLNKSEPWELPEKAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDK 104
79*************************999.88***************99999************************************* PP
NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
e++++ ++elvg+kktLvfy+grap+gekt+Wvmheyrl
Cagra.4091s0015.1.p 105 EIFNStTSELVGMKKTLVFYRGRAPRGEKTSWVMHEYRL 143
***9878889***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MEQGDHQQQK KEEETLPPGF RFHPTDEELI SYYLVNKIAD QNFTGKAIAD VDLNKSEPWE 60
LPEKAKMGGK EWYFFSLRDR KYPTGVRTNR ATNTGYWKTT GKDKEIFNST TSELVGMKKT 120
LVFYRGRAPR GEKTSWVMHE YRLHSKSSYR TSKQDEWVVC RVFKKTEATK KYISSSSSST 180
SHNHNQNHAR ASILLTNNNN PSYSSDLLQL PPHLQPHPSL NINQSLMANA VHLAELSRVF 240
RASTSTTMDS AHHQQLMNYN HMPISGLNLN LGGALVQPPP VVSLEDVAAV SGSFNGENGF 300
GNVEMSQCMD LDGYWPSY*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-58 | 15 | 171 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-58 | 15 | 171 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-58 | 15 | 171 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-58 | 15 | 171 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 3e-58 | 15 | 171 | 16 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 3e-58 | 15 | 171 | 16 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC006403 | 0.0 | AC006403.4 Arabidopsis thaliana chromosome 2 clone T28I24 map mi238, complete sequence. |
| GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Vidal EA,Álvarez JM,Gutiérrez RA
Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
Plant Signal Behav, 2014. 9(3): p. e28501
[PMID:24642706] - Lee MH,Jeon HS,Kim HG,Park OK
An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
New Phytol., 2017. 214(1): p. 343-360
[PMID:28032643]
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