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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4003s0049.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 284aa MW: 30671.9 Da PI: 6.064 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.4 | 3.9e-11 | 166 | 212 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++++P + +k Ka +L + ++YI+sLq Cagra.4003s0049.1.p 166 HSLAERARREKISEKMTALQDIIPGC----NKIIGKALVLDEIINYIQSLQ 212 999***********************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.67E-17 | 159 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.99E-10 | 159 | 216 | No hit | No description |
PROSITE profile | PS50888 | 15.18 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-17 | 162 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-8 | 166 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.9E-10 | 167 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDPPLVNDSS FSAANPSSYT LSEIWPFPVN DAVRSGLRLA VNSGRVFNRS EHSGSKDVSV 60 AEESTVTDLT AGWGGRKTRD LNSEDDSSKM VSSSSSGNEL KESGDKKRKL CGSESGNADC 120 SMRPEGETSS GGGGGGSKAT EQKNKPEPPK DYIHVRARRG QATDRHSLAE RARREKISEK 180 MTALQDIIPG CNKIIGKALV LDEIINYIQS LQRQVEFLSM KLEVVNSGAS SGPTIGVFPS 240 GDLGTLPIDV HRTIYEQQEA NETRGSQPEW LHMQVDGNFN RTT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 108 | LKESGDKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4003s0049.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY072104 | 0.0 | AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds. | |||
GenBank | AY084578 | 0.0 | AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence. | |||
GenBank | AY123023 | 0.0 | AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280920.1 | 0.0 | transcription factor bHLH79 | ||||
Swissprot | Q9LV17 | 0.0 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | R0GRI4 | 0.0 | R0GRI4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4003s0049.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1855 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4003s0049.1.p |
Publications ? help Back to Top | |||
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