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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.4003s0006.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
MIKC_MADS |
Protein Properties |
Length: 210aa MW: 24504.1 Da PI: 9.737 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.4003s0006.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 94.4 | 5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien + rqvtfskRrng+lKKA+ELSvLCda+v++iifs++g+lye+ss
Cagra.4003s0006.1.p 9 KKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQVSLIIFSQRGRLYEFSS 59
68***********************************************96 PP
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2 | K-box | 68 | 3.1e-23 | 78 | 170 | 5 | 97 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94
++++ +e ++l+qe++ L +i+ L+ +R+llG+++ s+sl+eLq++ +qL++sl k+R++K +l+ eq+e+l+ kek+l +en +L
Cagra.4003s0006.1.p 78 TSNHDSEIYLQQLKQEASHLITKIDHLEFHKRRLLGQGIASCSLEELQEIDSQLQRSLGKVRERKAQLFSEQVEKLKAKEKQLLDENVKL 167
3444677889******************999*********************************************************** PP
K-box 95 rkk 97
++k
Cagra.4003s0006.1.p 168 HQK 170
*98 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 32.394 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.7E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.01E-33 | 3 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.06E-43 | 3 | 78 | No hit | No description |
Pfam | PF00319 | 8.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.039 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.3E-23 | 87 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009838 | Biological Process | abscission |
GO:0009909 | Biological Process | regulation of flower development |
GO:0010150 | Biological Process | leaf senescence |
GO:0080187 | Biological Process | floral organ senescence |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 210 aa
Download sequence Send
to blast |
MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQVSLIIFSQ RGRLYEFSSS 60 DMKKTIERYR KYTKDHETSN HDSEIYLQQL KQEASHLITK IDHLEFHKRR LLGQGIASCS 120 LEELQEIDSQ LQRSLGKVRE RKAQLFSEQV EKLKAKEKQL LDENVKLHQK SVIETWRGSN 180 EQQEKCRVID LNLDVQTDLF IGLPNRHCS*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
5f28_A | 6e-22 | 1 | 82 | 1 | 83 | MEF2C |
5f28_B | 6e-22 | 1 | 82 | 1 | 83 | MEF2C |
5f28_C | 6e-22 | 1 | 82 | 1 | 83 | MEF2C |
5f28_D | 6e-22 | 1 | 82 | 1 | 83 | MEF2C |
6byy_C | 8e-22 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 8e-22 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
6bz1_A | 7e-22 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6bz1_B | 7e-22 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6bz1_C | 7e-22 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6bz1_D | 7e-22 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6c9l_A | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY054220 | 0.0 | AY054220.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds. |
GenBank | AY065206 | 0.0 | AY065206.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds. |
GenBank | AY066035 | 0.0 | AY066035.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds. |
GenBank | AY096509 | 0.0 | AY096509.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds. |
GenBank | AY141213 | 0.0 | AY141213.1 Arabidopsis thaliana MADS-box protein AGL42 mRNA, complete cds. |