PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3842s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 144aa    MW: 16478.3 Da    PI: 6.7869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3842s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-203382255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr+++ +g+W+AeIrdp     +   r++lg+f tae Aa+a++aa+++++g
  Cagra.3842s0001.1.p 33 RYRGVRQRP-WGKWAAEIRDP-----HkaMRVWLGTFETAEAAARAYDAAALRFRG 82
                         8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.87E-223292No hitNo description
PROSITE profilePS5103225.8043390IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-233392IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-333391IPR001471AP2/ERF domain
SMARTSM003802.9E-373396IPR001471AP2/ERF domain
PfamPF008471.6E-133382IPR001471AP2/ERF domain
PRINTSPR003674.5E-123445IPR001471AP2/ERF domain
PRINTSPR003674.5E-125672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009658Biological Processchloroplast organization
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
REREEFVLPP QPLVTSSAEE CESSTTSLEK PKRYRGVRQR PWGKWAAEIR DPHKAMRVWL  60
GTFETAEAAA RAYDAAALRF RGSKAKLNFP ENVGTTRSIE PDSHHFLQNS MQPPLTYLEQ  120
CPSLSSSYDQ WTEYDQYNYP SYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-253095268ATERF1
3gcc_A3e-253095268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Binds to the GCC-box pathogenesis-related promoter element and the cis-element CE1 (coupling element 1). Involved in the regulation of gene expression in response to abiotic stresses, possibly through the abscisic acid (ABA) signaling pathway (PubMed:20193749). Involved in resistance to the beet cyst nematode Heterodera schachtii in roots. May promote callose deposition at syncytia which may interfere with nutrient import into syncytia and inhibit the development of nematodes (PubMed:23510309). {ECO:0000269|PubMed:20193749, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:23510309}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00183DAPTransfer from AT1G43160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3842s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, heat and drought stresses (PubMed:21069430). Induced by osmotic stress (PubMed:20193749). Induced by jasmonate (JA) (PubMed:21069430, PubMed:14756769, PubMed:17786451). Induced by salicylic acid (SA) (PubMed:14756769, PubMed:21069430). Induced by abscisic acid (ABA) (PubMed:20193749, PubMed:21069430). Induced by ethylene (PubMed:14756769). Induced by infection with the bacterial pathogen Pseudomonas syringae pv. tomato DC3000 (PubMed:14756769, PubMed:23510309). Induced by the bacterial pathogen Pseudomonas syringae pv. maculicola ES4326 (PubMed:14756769). Induced by wounding (PubMed:17786451). Down-regulated by infection with the beet cyst nematode Heterodera schachtii (PubMed:23510309). {ECO:0000269|PubMed:14756769, ECO:0000269|PubMed:17786451, ECO:0000269|PubMed:20193749, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:23510309}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644487.17e-90LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-6
SwissprotQ7G1L21e-62RAP26_ARATH; Ethylene-responsive transcription factor RAP2-6
TrEMBLR0IJM61e-101R0IJM6_9BRAS; Uncharacterized protein
STRINGCagra.3842s0001.1.p1e-103(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.12e-57related to AP2 6
Publications ? help Back to Top
  1. He P, et al.
    Activation of a COI1-dependent pathway in Arabidopsis by Pseudomonas syringae type III effectors and coronatine.
    Plant J., 2004. 37(4): p. 589-602
    [PMID:14756769]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zou Y, et al.
    A gain-of-function mutation in Msl10 triggers cell death and wound-induced hyperaccumulation of jasmonic acid in Arabidopsis.
    J Integr Plant Biol, 2016. 58(6): p. 600-9
    [PMID:26356550]
  4. Guo R,Sun W
    Sumoylation stabilizes RACK1B and enhance its interaction with RAP2.6 in the abscisic acid response.
    Sci Rep, 2017. 7: p. 44090
    [PMID:28272518]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]
  6. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]