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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cagra.3834s0005.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
BBR-BPC |
| Protein Properties |
Length: 285aa MW: 31699.1 Da PI: 10.2869 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.3834s0005.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 362.4 | 9.2e-111 | 1 | 284 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdn 79
mdddg+ rn+gyyepa a++k nlglqlmssi +r++k+ re+nl ++++++++++r+ m++ +++++ ++dn
Cagra.3834s0005.1.p 1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSSI-DRNTKPflpgRESNL-MIGSNGSYHPREheasmpMNY----SWINQ------PKDN 76
99**99..9*******999**************.9**************.************998888888....*****......**** PP
GAGA_bind 80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169
k++++l++++ p++++v+s+t+ +s+q++++p ++ s +e + + e ++ +k++k++ + +++++pk+kk +k+k+
Cagra.3834s0005.1.p 77 KFFNMLPIST------PNYSNVMSDTSGSNSMQMMHQPVVNTSRFEENPAPPPRE---DEIVQPSKKRKMRGSISSPTVPKAKKPRKPKE 157
*******766......99****************999888887777444433333...34455677788888888999999999999999 PP
GAGA_bind 170 ksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
+s ++ ++ +++r+k kks+dlv+ngvs+D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grK
Cagra.3834s0005.1.p 158 ESGVT-----NNAHQQRVKPAKKSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRK 242
55433.....44445789************************************************************************ PP
GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
mSqgafkk+LekLa+eGy+++n +DLk+hWA+HGtnkfvtir
Cagra.3834s0005.1.p 243 MSQGAFKKVLEKLATEGYSFGNSIDLKSHWARHGTNKFVTIR 284
*****************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MDDDGFRNWG YYEPAAATFK GNLGLQLMSS IDRNTKPFLP GRESNLMIGS NGSYHPREHE 60
ASMPMNYSWI NQPKDNKFFN MLPISTPNYS NVMSDTSGSN SMQMMHQPVV NTSRFEENPA 120
PPPREDEIVQ PSKKRKMRGS ISSPTVPKAK KPRKPKEESG VTNNAHQQRV KPAKKSVDLV 180
INGVSMDISG LPVPVCTCTG TPQQCYRWGC GGWQSACCTT NISMYPLPMS TKRRGARISG 240
RKMSQGAFKK VLEKLATEGY SFGNSIDLKS HWARHGTNKF VTIR*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
