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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3807s0064.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ARR-B | ||||||||
Protein Properties | Length: 537aa MW: 60151.4 Da PI: 6.3016 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82.9 | 3.4e-26 | 183 | 236 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+ Wt+eLH++F++av++L G ekA+Pk+il+lm+v+ Lt+e+v+SHLQk+R+ Cagra.3807s0064.1.p 183 KARVIWTHELHNKFLSAVDHL-GVEKAVPKKILDLMNVDKLTRENVASHLQKFRV 236 68*******************.********************************7 PP | |||||||
2 | Response_reg | 86.4 | 8e-29 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+++ +++l+++l + +y +v+++ +++ alell+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++++++ + Cagra.3807s0064.1.p 19 VLAVDDDQTCLRILQTLLHRCQY-HVTTTNQAQTALELLRENRnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMK 106 799********************.***************999889*******************87754.558***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 +k Ga d+l Kp+ +eel + Cagra.3807s0064.1.p 107 GVKHGACDYLLKPVRIEELKN 127 ******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.5E-159 | 1 | 524 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 7.12E-37 | 16 | 144 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.7E-44 | 16 | 167 | No hit | No description |
SMART | SM00448 | 6.1E-34 | 17 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.294 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 6.2E-26 | 19 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.86E-29 | 20 | 132 | No hit | No description |
PROSITE profile | PS51294 | 12.485 | 180 | 239 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-27 | 180 | 240 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-18 | 181 | 240 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-25 | 183 | 236 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-5 | 188 | 234 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MTMEHEIEAL DQFPVGMRVL AVDDDQTCLR ILQTLLHRCQ YHVTTTNQAQ TALELLRENR 60 NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD PKYVMKGVKH GACDYLLKPV 120 RIEELKNIWQ HVVRKSKLKK SNSSLSNGAG NSDRANRKRK EQYEEEEEEE RGNENDDPTA 180 QKKARVIWTH ELHNKFLSAV DHLGVEKAVP KKILDLMNVD KLTRENVASH LQKFRVALKK 240 VSDEANQQAN RVAIDSQLMQ MSSHKGLGGF YHHRAVPVGS GQFHGEATMM RHYPSNRNIG 300 RLNSLAGGMF QPVSSAFPRN HNERGNILQG LPLPPLEELQ INKAFPSFTS QQNSLMVASN 360 NNHLLLNGHP QSSSPSLNPG FSPQFEINKR LEHWSNTVLS TNIPQSDVHS KPDTLEWTAF 420 CDSASPLINS NLDTNPHPDL GSSSAAQTDF FNPLQVNQQQ ANNSGPITEA QHFRNCDSKQ 480 GLHMASDAGS LDDIVNSLMT QEQSQSDFPE GDWVLDGLAQ TEHGYEKQFF PFSLST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-33 | 179 | 242 | 1 | 64 | ARR10-B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00072 | SELEX | Transfer from AT4G31920 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.3807s0064.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ005195 | 0.0 | AJ005195.1 Arabidopsis thaliana mRNA for receiver-like protein 4. | |||
GenBank | AK228149 | 0.0 | AK228149.1 Arabidopsis thaliana mRNA for predicted protein, complete cds, clone: RAFL14-61-J20. | |||
GenBank | BT003158 | 0.0 | BT003158.1 Arabidopsis thaliana At4g31920 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006283502.1 | 0.0 | two-component response regulator ARR10 | ||||
Swissprot | O49397 | 0.0 | ARR10_ARATH; Two-component response regulator ARR10 | ||||
TrEMBL | R0GVR2 | 0.0 | R0GVR2_9BRAS; Two-component response regulator | ||||
STRING | Cagra.3807s0064.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 0.0 | response regulator 10 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3807s0064.1.p |