PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3807s0040.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 542aa    MW: 60995.8 Da    PI: 8.2718
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3807s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.6e-1425981594
                         -EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3 15 rlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                          l +p +f  +h  g +  e+kt +l++  s  +We+k+     ++r  lt+GWkeFv an+ + gD+ vF+++g+  f  +v
  Cagra.3807s0040.1.p 25 YLNIPVTFYLKHlqGRN--EHKTAKLRTdASDTVWELKI---EDGQR--LTEGWKEFVTANDFRIGDVTVFRHEGDLVF--HV 98
                         589*********85444..5667888775999*******...33334..9**********************8876555..44 PP
2B354.91.6e-17153242698
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++ ++l ++ l++p  fa++ g+ k+++ +++l +e grsW++ l ++k++++++l+ GW++F++ang++ g   +Fkl++ +++++v++
  Cagra.3807s0040.1.p 153 VSVSNLYEDKLYVPVGFARSSGLCKKTG-KIVLLNELGRSWKLSLDHDKSGSKTYLRHGWRSFCNANGMNRGGY-TFKLVR-NSGTPVIQ 239
                          5667778899***********9887665.9******************************************96.***998.7888**** PP

                          EE- CS
                   B3  96 vfr 98 
                          v+ 
  Cagra.3807s0040.1.p 240 VCP 242
                          996 PP
3B373.32.9e-23257353198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ff+ +++ ++l ++ l+lp+ f++++g++k +  +++l++e+gr+W++ l+++k+ +++++++GW++F++ ngLk++D++ Fkl+  +++
  Cagra.3807s0040.1.p 257 FFSGFVTTSNLDHDALYLPRVFVRSNGLDKGRCDEMVLKNEDGRTWNLVLRHNKSNNSVLISRGWRSFCQVNGLKARDTFRFKLVI-TGG 345
                          78889999***************************************************************************975.555 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                          + v+ +++
  Cagra.3807s0040.1.p 346 KHVLCLCS 353
                          55666665 PP
4B345.61.3e-14441537199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ + + ++++s+ l+lp  f++++g+kk++  ++tl  ++g    v+l  +   gr  l++ Wk+F++ +g+k g+++v++l++++++
  Cagra.3807s0040.1.p 441 FVTLTFSLYSFRSNKLRLPLCFTRANGIKKPG--KITLLGLDGVYRMVRLLKDHENGRLRLGRDWKGFCRVHGVKIGESFVLELIWKKDA 528
                          667778999******************99766..7***************99999999*****************************999 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                           +v+k++ k
  Cagra.3807s0040.1.p 529 GPVLKFCTK 537
                          9***99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-198104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-199111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.80111104IPR003340B3 DNA binding domain
CDDcd100173.03E-121299No hitNo description
SMARTSM010193.5E-1614104IPR003340B3 DNA binding domain
PfamPF023622.5E-92695IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-17142245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-18146248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-15148242No hitNo description
PROSITE profilePS5086312.576148244IPR003340B3 DNA binding domain
SMARTSM010192.8E-22149244IPR003340B3 DNA binding domain
PfamPF023622.4E-16151242IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-20250352IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-20253355IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-18256353No hitNo description
PROSITE profilePS5086315.27257355IPR003340B3 DNA binding domain
SMARTSM010194.1E-27257355IPR003340B3 DNA binding domain
PfamPF023621.6E-22257354IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-14433536IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-16439535IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-17441538IPR003340B3 DNA binding domain
PROSITE profilePS5086310.503441538IPR003340B3 DNA binding domain
PfamPF023623.1E-14441537IPR003340B3 DNA binding domain
CDDcd100177.15E-13441526No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MADSVLQTPK NPHFFQPLLP GFDSYLNIPV TFYLKHLQGR NEHKTAKLRT DASDTVWELK  60
IEDGQRLTEG WKEFVTANDF RIGDVTVFRH EGDLVFHVTA LGLRGCEIEY TSSHSVDDDC  120
DNHQENIETR PVKKNPRREE DSSLDHSCFV ANVSVSNLYE DKLYVPVGFA RSSGLCKKTG  180
KIVLLNELGR SWKLSLDHDK SGSKTYLRHG WRSFCNANGM NRGGYTFKLV RNSGTPVIQV  240
CPAGCRPDAE SSSDCSFFSG FVTTSNLDHD ALYLPRVFVR SNGLDKGRCD EMVLKNEDGR  300
TWNLVLRHNK SNNSVLISRG WRSFCQVNGL KARDTFRFKL VITGGKHVLC LCSAETSRDT  360
RVLECSEGTD VDSLSTDPSR AEESSKTEES EDNGRDNTIV KEDSEEESIE DKSSLRECSI  420
AEKWKHSSRP GASSSSSQSR FVTLTFSLYS FRSNKLRLPL CFTRANGIKK PGKITLLGLD  480
GVYRMVRLLK DHENGRLRLG RDWKGFCRVH GVKIGESFVL ELIWKKDAGP VLKFCTKVNC  540
V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3807s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634055.10.0B3 domain-containing protein REM17
TrEMBLR0F4H10.0R0F4H1_9BRAS; Uncharacterized protein
STRINGCagra.3807s0040.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-141B3 family protein