PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 766aa MW: 88071.2 Da PI: 7.637

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.3793s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.2	7.4e-20	44	118	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn++A+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+++++++eHnHel Cagra.3793s0006.1.p 44 DYYNSFATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHEL 118 69************************************876..............589*************************98 PP
2	FAR1	68.4	1.8e-21	205	281	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+ vGF+vr+ + +sk +g+it+r+fvCskeg+++++ r+gC a +++k++++g w v++l+++HnHel Cagra.3793s0006.1.p 205 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELE 280 6*************************************9994..............799*************************97 PP FAR1 91 p 91 p Cagra.3793s0006.1.p 281 P 281 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-15	44	118	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.1E-17	205	281	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-25	377	469	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.373	651	687	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-8	658	684	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-8	662	689	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence Send to blast
MVVKAYPLGM VRIMNNNGIG EDEGDSVVEP YVGLEFDTAE EARDYYNSFA TRTGFKVRTG 60 QLYRSRTDGT VSSRRFVCSK EGFQLNSRTG CPAFIRVQRR DTGKWVLDQI QKEHNHELGG 120 HVEETTPRPS VQQRAPAPTK LGISVPHRPK MKVVDEADKG RSCPSGVISF KRFKGAEESD 180 EQTEPKATTE PYAGLEFGSA NEACQFYQAY AEVVGFRVRI GQLFRSKVDG SITSRRFVCS 240 KEGFQHPSRM GCGAYMRIKR QDSGGWIVDR LNKDHNHELE PGKKNAGMKK ITEDVTGGLD 300 SVDLIELNDF NNHISTTREN TIGKEWYPVL FDYFQSKQAE DMGFFYAVEL DSNGSCMSIF 360 WADSRSRFAC SQFGDAVVFD TSYRNGEYSV PFATFIGFNH HRQPVLLGGA LVADESKEAF 420 SWLFQTWLRA MSGRRPRSII ADQDLPIQQA VAQVFPGAHH RFSAWQIRSK EQENLRSFPN 480 EFKYEYEKCL YQSQTTVEFD TMWSALVNKY GLRDNMWLRE IYEKRENWVP AYLRASFFGG 540 IPVNGTFEPF YGTSLNSLTS LREFISRYEQ GLEQRREEER KEDFNSYNLQ PFLQTKEPVE 600 EQCRRLYTLT IFRIFQSELA QSYNYLGLKT YEEGAISRFL VRKCGNENEK HAVTFSASNL 660 NASCSCQMFE YEGLLCRHIL KVFNLLDIRE LPSRYILHRW TKNAEFGFVR DVESGVTSQD 720 LKALMIWSLR EAASKYIEFG TSSLEKYKLA YEIMREGGKK LCWQR*

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence Send to blast

MVVKAYPLGM VRIMNNNGIG EDEGDSVVEP YVGLEFDTAE EARDYYNSFA TRTGFKVRTG  60
QLYRSRTDGT VSSRRFVCSK EGFQLNSRTG CPAFIRVQRR DTGKWVLDQI QKEHNHELGG  120
HVEETTPRPS VQQRAPAPTK LGISVPHRPK MKVVDEADKG RSCPSGVISF KRFKGAEESD  180
EQTEPKATTE PYAGLEFGSA NEACQFYQAY AEVVGFRVRI GQLFRSKVDG SITSRRFVCS  240
KEGFQHPSRM GCGAYMRIKR QDSGGWIVDR LNKDHNHELE PGKKNAGMKK ITEDVTGGLD  300
SVDLIELNDF NNHISTTREN TIGKEWYPVL FDYFQSKQAE DMGFFYAVEL DSNGSCMSIF  360
WADSRSRFAC SQFGDAVVFD TSYRNGEYSV PFATFIGFNH HRQPVLLGGA LVADESKEAF  420
SWLFQTWLRA MSGRRPRSII ADQDLPIQQA VAQVFPGAHH RFSAWQIRSK EQENLRSFPN  480
EFKYEYEKCL YQSQTTVEFD TMWSALVNKY GLRDNMWLRE IYEKRENWVP AYLRASFFGG  540
IPVNGTFEPF YGTSLNSLTS LREFISRYEQ GLEQRREEER KEDFNSYNLQ PFLQTKEPVE  600
EQCRRLYTLT IFRIFQSELA QSYNYLGLKT YEEGAISRFL VRKCGNENEK HAVTFSASNL  660
NASCSCQMFE YEGLLCRHIL KVFNLLDIRE LPSRYILHRW TKNAEFGFVR DVESGVTSQD  720
LKALMIWSLR EAASKYIEFG TSSLEKYKLA YEIMREGGKK LCWQR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.3793s0006.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF360270	0.0	AF360270.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds.
GenBank	ATAC018907	0.0	AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBank	AY150446	0.0	AY150446.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006297026.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_023641342.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_023641343.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	R0HJN8	0.0	R0HJN8_9BRAS; Uncharacterized protein
STRING	Cagra.3793s0006.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Cagra.3793s0006.1.p

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]