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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.3784s0003.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
SRS |
Protein Properties |
Length: 322aa MW: 34032 Da PI: 6.7258 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.3784s0003.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 225.8 | 8e-70 | 87 | 246 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkq 83
rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s + ++ +kr+r++ + +
Cagra.3784s0003.1.p 87 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGDGAGsgsggaggGSSIPKRHRDT-TLPA 175
67899***************************************************99887655446789999889999999997.7778 PP
DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
++ss++l+s ++ e+ +s+P evss+a+frcv++s+vddg+ ++aYqt+v+igGh+fkGiLydqG+e+
Cagra.3784s0003.1.p 176 GTSSSSRLPSDSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGDGQYAYQTTVNIGGHLFKGILYDQGPES 246
8889999**************************************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MAGIFSLGGN NNNGDQEEEN QQQQKTNWVW YRSNANTTNI NQGSSQQIWQ IPPEQMLMHH 60 HPHPQQQSLD LYPGHQIDVS DLATSSRSIT ISCRDCGNQA KKDCTHMRCR TCCKSRGFDC 120 STHVRSTWIP VARRRERQQQ LHMSTSGGDG AGSGSGGAGG GSSIPKRHRD TTLPAGTSSS 180 SRLPSDSAGL EMGEASFPGE VSSDALFRCV KMSGVDDGDG QYAYQTTVNI GGHLFKGILY 240 DQGPESSYMS AGSGGSDHQS SSAGGGGGGN PFNPSIVADG GGGGSSAMFV DPNSGGYYSS 300 NMTTSVFMPP GTQFYQNPPR S*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL022141 | 0.0 | AL022141.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII project). |
GenBank | AL161589 | 0.0 | AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85. |
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G36260.1 | 1e-154 | Lateral root primordium (LRP) protein-related |