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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3782s0036.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 25639.8 Da PI: 9.2903 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.4e-19 | 72 | 122 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ g r++lg+f+ta eAa+ +++a+ kl+g Cagra.3782s0036.1.p 72 HYRGVRRRP-WGKYAAEIRDPKKKG--VRVWLGTFDTAMEAARSYDKAAFKLRG 122 7********.**********96643..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-31 | 71 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.184 | 72 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-37 | 72 | 136 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.53E-30 | 72 | 130 | No hit | No description |
SuperFamily | SSF54171 | 3.14E-22 | 72 | 131 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-12 | 72 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 73 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDSSYQQQQK EQDQSTLDLI TQHLLTDFYS FETFVSNIHH STTSTLSQRK PPLATIAVPT 60 TAPVAQEDDQ RHYRGVRRRP WGKYAAEIRD PKKKGVRVWL GTFDTAMEAA RSYDKAAFKL 120 RGCKAILNFP LEAGKHADLG DNNNNNNNKT LSLKEKRKRQ VPEDESYLRS HKTVKREEAQ 180 AQVDACPLTP SSWMGFWDGA DSKDMGIFSV PPLPPSPSLG YSQLVLT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-28 | 71 | 131 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.3782s0036.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX003248 | 0.0 | JX003248.1 Capsella rubella clone BAC 34G24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281047.1 | 1e-167 | ethylene-responsive transcription factor ERF105 | ||||
Swissprot | Q8VY90 | 1e-129 | EF105_ARATH; Ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | K4FZR1 | 1e-165 | K4FZR1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.3782s0036.1.p | 1e-171 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7893 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 1e-111 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3782s0036.1.p |
Publications ? help Back to Top | |||
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