PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3706s0015.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family FAR1
Protein Properties Length: 208aa    MW: 24282.5 Da    PI: 8.219
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3706s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.81.3e-2638126290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          fY++Y++++GF +r+ + ++s+++g+i  r+f C+keg+  + + k  + r++r++tr gCka+++vk +++gkw++tk+++eHnH+l+
  Cagra.3706s0015.1.p  38 FYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSIRGKFGSVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLV 126
                          9**************************************999999989***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-2438126IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEDEEDPATK NINTTDDDFA IEPREGIEFE SEDAAKIFYD DYSRRLGFVM RVMSCRRSEK  60
DGRILARRFG CNKEGHCVSI RGKFGSVRKP RPSTREGCKA MIHVKYDRSG KWVITKFVKE  120
HNHPLVVSPR EARQTLDEKD KRIQELTIEL RNKKRLCAAY REQLDAFARI IEEHSDQIAK  180
KVENVVSNLK EFEPIEHELW RNKQDAI*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3706s0015.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0028910.0BT002891.1 Arabidopsis thaliana clone RAFL14-97-G02 (R20421) unknown protein (At2g43280) mRNA, complete cds.
GenBankBT0044090.0BT004409.1 Arabidopsis thaliana clone U20421 unknown protein (At2g43280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294998.11e-150protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL82e-24FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLR0FYQ41e-149R0FYQ4_9BRAS; Uncharacterized protein
STRINGCagra.3706s0015.1.p1e-152(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39182855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-141FAR1 family protein
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]