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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.3675s0017.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
GATA |
Protein Properties |
Length: 475aa MW: 53078.8 Da PI: 6.9774 |
Description |
GATA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.3675s0017.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GATA | 50.1 | 3.7e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+
Cagra.3675s0017.1.p 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
****************88888***********997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008270 | Molecular Function | zinc ion binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 475 aa
Download sequence Send
to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RPEGDELEIE 60 DRKPQRVMIK GMSLNKKIPK KKSYQENFTV KRANLEFSTG FKRKALDEEA SNRSSSGSVV 120 SNSESCAQSN AWETTFPCKR RTGVGRPKAA SSVEKLTKDL YTILQEQQSS CLSGSTEEDL 180 LFENEPPMLL GHGSVLMRDP HSGTREEESE ASSLVVESSK SSSVHSAKFG GKAIKQEQLK 240 RSKPQVLGRQ SLLLCSIDLK DVFNFDEFIE KFTEDEQKKL MKLLPQVDSF DRPDSLRSMF 300 ESSQFKENLS LFQQLVADGV FETSSSGSKH DDVKTLAKLA LTDPNKSHLL ESYKMLKEQR 360 KEIEDSVTTP PRVSNLSPSN NNSLVTVERP CESLNQNFSE TRAVMRSPKE VMKIRSNHTE 420 TKEIIENSVS SFNPMSCGGS LVFRYEDNDI SDQDLLLDVP SNGSFPQAEL LHMI*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK226642 | 0.0 | AK226642.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-38-K02. |