 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.3527s0014.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 316aa MW: 34678.9 Da PI: 8.1461 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.3527s0014.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.3 | 6.2e-19 | 161 | 215 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq +Lee F+++++++ +++ LAk+l+L++rqV vWFqNrRa+ k
Cagra.3527s0014.1.p 161 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLQTRQVEVWFQNRRARTK 215
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 123.3 | 1.1e-39 | 161 | 250 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+lq+rqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+eLr +
Cagra.3527s0014.1.p 161 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLQTRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVSELR-A 249
69*************************************************************************************9.5 PP
HD-ZIP_I/II 91 l 91
l
Cagra.3527s0014.1.p 250 L 250
5 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MGERDDGLGL SLSLSLGFTP KEPSSRFNPM PMASYSSSSH MHMQQQSNYS HPHKIQNSWI 60
NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDDAAGVS SPNSTVSSVV SGKRSERELM 120
AAAAAAGGGR AEDNEMERAS CSLGGGSDDE DGSGNGDDGS RKKLRLSKEQ ALVLEETFKE 180
HSTLNPKQKM ALAKQLNLQT RQVEVWFQNR RARTKLKQTE VDCEYLRRCC ENLTEENRRL 240
QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMT SSSPMGQMSP 300
WAAIPLRQRP AAGSH*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 159 | 165 | SRKKLRL |
| 2 | 209 | 217 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ440781 | 0.0 | AJ440781.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT3 (hat3 gene). |
| GenBank | AY099565 | 0.0 | AY099565.1 Arabidopsis thaliana homeobox-leucine zipper protein HAT3 (At3g60390) mRNA, complete cds. |
| GenBank | BT008713 | 0.0 | BT008713.1 Arabidopsis thaliana At3g60390 gene, complete cds. |
