 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.3519s0014.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
LSD |
| Protein Properties |
Length: 151aa MW: 16596.7 Da PI: 4.8742 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.3519s0014.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 39.4 | 9.9e-13 | 57 | 81 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Cr lLsY rG+++V+C++C+tV
Cagra.3519s0014.1.p 57 CGSCRRLLSYLRGSKRVKCSCCHTV 81
************************9 PP
|
| 2 | zf-LSD1 | 47.2 | 3.6e-15 | 95 | 119 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C++C++lL+YP+GApsVRC++C+ +
Cagra.3519s0014.1.p 95 CNNCKVLLMYPYGAPSVRCSSCNSI 119
**********************975 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 151 aa
Download sequence Send
to blast |
MEEKKEEQNP REKEEEEEEE EGPPPGWESA VLPPPTAAAV NPNPTTAEIP EMAQMVCGSC 60
RRLLSYLRGS KRVKCSCCHT VNLVLEANQV GQVNCNNCKV LLMYPYGAPS VRCSSCNSIT 120
DIRENNKRSP WSEQQGPLKS VSSCPVSRES *
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT011760 | 1e-135 | BT011760.1 Arabidopsis thaliana At4g21610 mRNA, complete cds. |
| GenBank | BT012384 | 1e-135 | BT012384.1 Arabidopsis thaliana At4g21610 mRNA, complete cds. |
