PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3501s0057.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 321aa MW: 36333.7 Da PI: 7.5001 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.8 | 2.3e-32 | 92 | 147 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNhAa++Gg+a+DGCgEfmps ge+g+++al+C+AC+CHRnFHR+eve Cagra.3501s0057.1.p 92 MVKYKECLKNHAAAMGGNATDGCGEFMPS-GEDGSIEALTCSACNCHRNFHRKEVEG 147 699*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-31 | 93 | 156 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.9E-29 | 93 | 145 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.8E-31 | 94 | 145 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.436 | 95 | 144 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.66E-19 | 215 | 286 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-29 | 218 | 287 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.3E-27 | 225 | 281 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MEIASQEDHD MPIPLNTTFG AAGGDGHGHM NIHHHHDLHA PNSAPPTHNN ITTQPPQMPL 60 HGNGHGNNYD HHHHHHQDPH HVSYNAIIKK PMVKYKECLK NHAAAMGGNA TDGCGEFMPS 120 GEDGSIEALT CSACNCHRNF HRKEVEGEPA ATAMSPYHQQ PPPRKLMLNH HKIRSAMPHQ 180 MIMPIGVSNY RYMHNNSESE DFMEEDGVGV TAASRSLPHM PYNQKKRFRT KFTPEQKEKM 240 LNFAEKVGWK IQRQEDCVVQ RFCEEIGVKR RVLKVWMHNN KIHFSKKNNI NLEDNDNNEK 300 SNNLNNVDLS ANNDITKIVP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-23 | 226 | 281 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.3501s0057.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY074266 | 0.0 | AY074266.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds. | |||
GenBank | AY096738 | 0.0 | AY096738.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F14L17 | 0.0 | AC012188.2 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305389.1 | 0.0 | zinc-finger homeodomain protein 4 | ||||
Refseq | XP_006305390.1 | 0.0 | zinc-finger homeodomain protein 4 | ||||
Swissprot | Q9M9S0 | 0.0 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | R0IMH2 | 0.0 | R0IMH2_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.3501s0057.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3339 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-163 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3501s0057.1.p |