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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.3501s0027.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
BBR-BPC |
| Protein Properties |
Length: 279aa MW: 31060.3 Da PI: 10.2698 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.3501s0027.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 358.7 | 1.2e-109 | 1 | 278 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd....maflqrdkalaernkalverdnkl 81
mdddg+ rn+gyyepa a++k nlglqlms+i +r++k+ r+ nl ++++++++++++ m++ +++++ +++k+
Cagra.3501s0027.1.p 1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSTI-DRNTKPflpgRDPNL-MIGPNGSYHHQEppihMSY----NWINQ-------QKDKF 75
99**99..9*******999**************.9**************.************5555555....*****.......899** PP
GAGA_bind 82 lalllvenslasalpvgvqvlsgtksidslqq..lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169
+++l+v+++ p++ +vl++t+s+ s+q+ ++++q+e+++v+ + ++++ ++++k++k++ + ++ +k+kk +k+k+
Cagra.3501s0027.1.p 76 FNMLPVTTA-----PNYGNVLPETSSAPSMQMnlHHHHQTEENPVK-------LEDEVVQPNNNNKKRKTNP--KAGSATKAKKPRKPKD 151
*****9997.....9*****************85556899999988.......3345555555555555444..5677788888889988 PP
GAGA_bind 170 ksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
+++ ++++++ +r+k kks+d+v+ngvs+D+s+lPvP+C+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grK
Cagra.3501s0027.1.p 152 ENS---NNNNTNV--SRVKPAKKSVDMVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRK 236
432...2333333..689************************************************************************ PP
GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
mSqgafkk+LekLa++G++++np+DLk+hWA+HGtnkfvtir
Cagra.3501s0027.1.p 237 MSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 278
*****************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MDDDGFRNWG YYEPAAATFK GNLGLQLMST IDRNTKPFLP GRDPNLMIGP NGSYHHQEPP 60
IHMSYNWINQ QKDKFFNMLP VTTAPNYGNV LPETSSAPSM QMNLHHHHQT EENPVKLEDE 120
VVQPNNNNKK RKTNPKAGSA TKAKKPRKPK DENSNNNNTN VSRVKPAKKS VDMVINGVSM 180
DISGLPVPIC TCTGAPQQCY RWGCGGWQSA CCTTNISMHP LPMSTKRRGA RISGRKMSQG 240
AFKKVLEKLA SDGFNFGNPI DLKSHWARHG TNKFVTIR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ307044 | 0.0 | DQ307044.1 Capsella rubella GAGA-binding transcriptional activator (BBR/BPC2) gene, complete cds. |
| GenBank | DQ307045 | 0.0 | DQ307045.1 Capsella rubella GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds. |
