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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cagra.3375s0004.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
NAC |
| Protein Properties |
Length: 552aa MW: 61774.6 Da PI: 4.549 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.3375s0004.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 156.1 | 1.5e-48 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
+pGfrFhPtdeelv++yLk+k+ +k+l++ +vi +d+yk++P++Lp + ++k+++++w++F++r++ky++ r++r t++gyWkatgkd
Cagra.3375s0004.1.p 17 APGFRFHPTDEELVMYYLKRKICRKRLRV-NVIGVFDVYKMDPEELPgQsMLKTGDRQWFYFTPRSRKYPNAARSSRGTETGYWKATGKD 105
69***************************.99**************96347888999********************************* PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ + +++ vg+kktLvfy+grap+ge+tdWvmhey++
Cagra.3375s0004.1.p 106 RVIEY-NSRSVGVKKTLVFYRGRAPNGERTDWVMHEYTM 143
***99.999****************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0070301 | Biological Process | cellular response to hydrogen peroxide |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005789 | Cellular Component | endoplasmic reticulum membrane |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 552 aa
Download sequence Send
to blast |
MAESSPDSCF KGGKFSAPGF RFHPTDEELV MYYLKRKICR KRLRVNVIGV FDVYKMDPEE 60
LPGQSMLKTG DRQWFYFTPR SRKYPNAARS SRGTETGYWK ATGKDRVIEY NSRSVGVKKT 120
LVFYRGRAPN GERTDWVMHE YTMDEDELGR CKNPQDYYAL YKLFKKSGAG PKNGEQYGAP 180
FQEEEWVDDD NEDGNAVPVP EQPVVRYEDT RRVDGRGLFN PVGLQLEDID ALLNGIPDAP 240
GVPSRCIPQV NSEEELQSTL VNNSAREILP NSQPYNRHSS FDSLETTEAT SAPKTSGISP 300
LVFEKDDFIE MDDLLIPELG DCSTEKAAQF SNHGEFGDIN EFDQLFHDVS MSLDMEPIDQ 360
GTYTDLSSLS NFANNTSDQR QQFQDQTPEN QLNNIMDPST TLNQFPNDTW FQDDQTVLFD 420
EQTFSAAFAS PSSGVMPDST NPTMSVNAQD QECQNGGGTT SQFSSALWAL MDSIPSTPAS 480
ACEGPLNRTF VRMSSFSRIR FKANGTPVTN TIAKKGIRNR GFLLLSIVGA LCAIFWVFIA 540
TIRVSGRTIF S*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF361813 | 0.0 | AF361813.1 Arabidopsis thaliana F23M19.13/F23M19.13 mRNA, complete cds. |
| GenBank | AY133552 | 0.0 | AY133552.1 Arabidopsis thaliana At1g34190/F23M19.13 mRNA, complete cds. |
| GenBank | BT000730 | 0.0 | BT000730.1 Arabidopsis thaliana clone RAFL09-58-M22 (R18947) putative NAM (no apical meristem) protein (At1g34190) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Van Aken O, et al.
Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
Plant Physiol., 2016. 171(3): p. 2150-65
[PMID:27208304] - Van Aken O,Ford E,Lister R,Huang S,Millar AH
Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
Plant J., 2016. 88(4): p. 542-558
[PMID:27425258] - Hu Z, et al.
Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
Plant Cell, 2016. 28(9): p. 2276-2290
[PMID:27543091] - Chi YH, et al.
The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
[PMID:28088515] - Van Aken O,Pogson BJ
Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
Cell Death Differ., 2017. 24(6): p. 955-960
[PMID:28498364] - Cheng P, et al.
The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
Front Plant Sci, 2018. 9: p. 182
[PMID:29497438]
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