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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.3364s0007.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
CO-like |
Protein Properties |
Length: 411aa MW: 46321.9 Da PI: 5.1455 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.3364s0007.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 23.6 | 1e-07 | 13 | 56 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + + +++++C ++ +lC+ C + H+ H++v
Cagra.3364s0007.1.p 13 ARACDSCVKRRARWYCAADDAFLCHGCDGSVHSAnplarrHERV 56
578*****************************657888888876 PP
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2 | CCT | 68.4 | 1.8e-23 | 361 | 404 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
Cagra.3364s0007.1.p 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 404
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MKSLASAVGG KTARACDSCV KRRARWYCAA DDAFLCHGCD GSVHSANPLA RRHERVRLKS 60 ASSGKHRHVP TSPPPTWHQG FTRKARTPRG GKKSHTMVFH DFVPEMSTED QAESYEVEGQ 120 LIFEVPVMNP MVEEQCFNES VETKIEFPMR PVCFKSSDEE DEDNAESCLN GLFPTDIELA 180 QFTADVETLL GGGADRDFQP TGELGLGEMM KIEKEEVEEE EGVATRDMCD LDEVDETSPF 240 EISFDYESAS KTSTNEEEEE DEKEDVMKNV MDMGVNEMSG KIKEENKEKA LMLRLNYESV 300 ISTWGGQGIP WTAQQPSEID LDMVCCPTDS MGERGVDQAH HYNHFRGLGL RMGEAHGDGG 360 REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRSSVVAAH *
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 371 | 387 | RRTRLFSKKIRYEVRKL |