PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3359s0011.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 390aa MW: 40903.8 Da PI: 6.7288 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 70.9 | 1.9e-22 | 293 | 355 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN++L+ e+++lk ++++l +e+ Cagra.3359s0011.2.p 293 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNGENSSLRAEINKLKSQYEELLAEN 355 89*********************************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 5.7E-27 | 1 | 107 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 6.0E-40 | 146 | 267 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.0E-17 | 288 | 351 | No hit | No description |
Pfam | PF00170 | 1.2E-20 | 293 | 355 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 4.9E-21 | 293 | 357 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.99 | 295 | 358 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.31E-11 | 296 | 352 | No hit | No description |
CDD | cd14702 | 4.27E-24 | 298 | 348 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 300 | 315 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MGSSEMEKSG KEKETKTPPP SSSSSSAPAT AVSQEPSTAV SAAMATQDWS GFQAYSAMPP 60 HGYVASSPQP HPYMWGVQHM MPPYGTPPHP YVAMYPPGGI YTHPSLPPGS YPYSPYAMPS 120 PNGMAEASGN TGSGIEGDSK TPDAKEKLPI KRSKGSLGSL NMIIGKNTET GKNSGASANG 180 ACSKSAESAS DGSSDGSDAN SQNDSGSRHN GKAGETASES GGSAHGPPRN GSNLPVSQTV 240 AIMPVSASGV PGPPTNLNIG MDYWSSHGNV SAAVPGVVVD GSQSQPWLQV SDERELKRQR 300 RKQSNRESAR RSRLRKQAEC DELAQRAEVL NGENSSLRAE INKLKSQYEE LLAENSSLKN 360 KFSSVPSLEG VEPDKNEQEP QRSTRQDVA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 309 | 315 | RRSRLRK |
2 | 309 | 316 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00173 | DAP | Transfer from AT1G32150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.3359s0011.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT004147 | 0.0 | BT004147.1 Arabidopsis thaliana clone RAFL16-02-K13 (R50047) putative G-Box binding protein (At1g32150) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023645330.1 | 0.0 | bZIP transcription factor 68 isoform X1 | ||||
Refseq | XP_023645331.1 | 0.0 | bZIP transcription factor 68 isoform X1 | ||||
Swissprot | Q84LG2 | 0.0 | BZP68_ARATH; bZIP transcription factor 68 | ||||
TrEMBL | D7KHG3 | 0.0 | D7KHG3_ARALL; Uncharacterized protein | ||||
STRING | Cagra.3359s0011.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32150.1 | 0.0 | basic region/leucine zipper transcription factor 68 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3359s0011.2.p |
Publications ? help Back to Top | |||
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