PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3359s0011.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 390aa    MW: 40903.8 Da    PI: 6.7288
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3359s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.91.9e-22293355163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN++L+ e+++lk ++++l +e+
  Cagra.3359s0011.1.p 293 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNGENSSLRAEINKLKSQYEELLAEN 355
                          89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.7E-271107IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.0E-40146267No hitNo description
Gene3DG3DSA:1.20.5.1707.0E-17288351No hitNo description
PfamPF001701.2E-20293355IPR004827Basic-leucine zipper domain
SMARTSM003384.9E-21293357IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.99295358IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-11296352No hitNo description
CDDcd147024.27E-24298348No hitNo description
PROSITE patternPS000360300315IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGSSEMEKSG KEKETKTPPP SSSSSSAPAT AVSQEPSTAV SAAMATQDWS GFQAYSAMPP  60
HGYVASSPQP HPYMWGVQHM MPPYGTPPHP YVAMYPPGGI YTHPSLPPGS YPYSPYAMPS  120
PNGMAEASGN TGSGIEGDSK TPDAKEKLPI KRSKGSLGSL NMIIGKNTET GKNSGASANG  180
ACSKSAESAS DGSSDGSDAN SQNDSGSRHN GKAGETASES GGSAHGPPRN GSNLPVSQTV  240
AIMPVSASGV PGPPTNLNIG MDYWSSHGNV SAAVPGVVVD GSQSQPWLQV SDERELKRQR  300
RKQSNRESAR RSRLRKQAEC DELAQRAEVL NGENSSLRAE INKLKSQYEE LLAENSSLKN  360
KFSSVPSLEG VEPDKNEQEP QRSTRQDVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309315RRSRLRK
2309316RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00173DAPTransfer from AT1G32150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3359s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0041470.0BT004147.1 Arabidopsis thaliana clone RAFL16-02-K13 (R50047) putative G-Box binding protein (At1g32150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645330.10.0bZIP transcription factor 68 isoform X1
RefseqXP_023645331.10.0bZIP transcription factor 68 isoform X1
SwissprotQ84LG20.0BZP68_ARATH; bZIP transcription factor 68
TrEMBLD7KHG30.0D7KHG3_ARALL; Uncharacterized protein
STRINGCagra.3359s0011.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.10.0basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]