PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3356s0062.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 736aa    MW: 82449.2 Da    PI: 6.8142
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3356s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-19105160156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rr R++++ +q++++e+lFe+n++ps+++r +L+k+lgLt +qVk+WFqN+R++ k
  Cagra.3356s0062.1.p 105 RRYRHRHNLHQIQQMEALFEENPHPSEKKRLKLSKELGLTPQQVKFWFQNKRTQLK 160
                          799*************************************************9877 PP
2START125.85.2e-402574881206
                          HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS
                START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWd 73 
                          ela ++aqelvk+ + +ep+W++ +       +n++e+ +                   ++ ea+ a++vv m++  lve +ld   +W+
  Cagra.3356s0062.1.p 257 ELAVSCAQELVKMCETNEPLWTQKRlddenGCLNEEEYKK------MflwppkadddyrFRREASMAKAVVMMNSISLVEAFLDAD-KWS 339
                          57899********************655553344444444......344555667899999*************************.*** PP

                          TT-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-......TTS--....-TTSE CS
                START  74 etla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvds......eqkppe...sssvv 143
                          e +     +a+t++ issg     g l lm+a lq+ splvp R+ +f+Ry +q  ++ +w+ivd  +ds      ++   +   +  + 
  Cagra.3356s0062.1.p 340 ELFCsivsSAKTIQIISSGvsgasGSLLLMYAGLQVVSPLVPtREAYFLRYVEQkAEERKWMIVDFPIDSfhgfikPA---StatTTDLY 426
                          *9999999**********************************************99999******9998732222222...134467777 PP

                          E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 144 RaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          R  + pSg++i++++ng+s+vtw+ehv+++++++  +++r  vksg+a+g+ +w+a l+rqce+
  Cagra.3356s0062.1.p 427 R--RKPSGCIIQEMPNGYSEVTWLEHVEVEEKHVlGEVVREYVKSGVAFGVERWLAVLKRQCER 488
                          7..8******************************9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.09E-1995161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-2099156IPR009057Homeodomain-like
PROSITE profilePS5007118.35102162IPR001356Homeobox domain
SMARTSM003892.6E-17104166IPR001356Homeobox domain
CDDcd000866.79E-18105163No hitNo description
PfamPF000464.9E-17105160IPR001356Homeobox domain
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PROSITE profilePS5084841.388248491IPR002913START domain
SuperFamilySSF559611.65E-27249490No hitNo description
CDDcd088756.62E-94252487No hitNo description
SMARTSM002341.4E-24257488IPR002913START domain
PfamPF018527.4E-33258488IPR002913START domain
SuperFamilySSF559612.06E-9508695No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
METKDKRETY GDYQVMKQGE EERHAVFNSD NVFGSNSSSP TATILNPNLK FNPFYSPNFP  60
YMIPKEEEYG MMSMIGSGSG VSTRSGHNLF EGTAIEQEPP SAKKRRYRHR HNLHQIQQME  120
ALFEENPHPS EKKRLKLSKE LGLTPQQVKF WFQNKRTQLK AHKDRRDHVM LKAENATLKV  180
ESQNLQSSSL CLSCSSCGYN LRLENTRLRQ ELDRLRHIVS MRKPPPLQEI ACFFPETNND  240
NNKNMLIAEE EKAIAMELAV SCAQELVKMC ETNEPLWTQK RLDDENGCLN EEEYKKMFLW  300
PPKADDDYRF RREASMAKAV VMMNSISLVE AFLDADKWSE LFCSIVSSAK TIQIISSGVS  360
GASGSLLLMY AGLQVVSPLV PTREAYFLRY VEQKAEERKW MIVDFPIDSF HGFIKPASTA  420
TTTDLYRRKP SGCIIQEMPN GYSEVTWLEH VEVEEKHVLG EVVREYVKSG VAFGVERWLA  480
VLKRQCERMA SLMATNITDL GVIPSVEARR NLMKLSQTMV KTFCLNISNS YGQGSTKDTL  540
RILTRKVCGG LVPCAVSVTY LPYSHHKVFD LLRNNQRLSQ LEILFNGSSF QEVAHIANGS  600
HPGNCISLLR INVESNTSQN VELMLQETCT DSSGSLLVYS TVDAEAVQLA MNGEDPSKVP  660
LLPVGFSIVP VNPSDGVEGI SVNLPSCLLT VAIQVLGSNA VAAERLDLST ASAISNRICA  720
TVNRITSALV NDVGY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3356s0062.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633855.10.0homeobox-leucine zipper protein HDG4
SwissprotQ8L7H40.0HDG4_ARATH; Homeobox-leucine zipper protein HDG4
TrEMBLR0GP440.0R0GP44_9BRAS; Uncharacterized protein
STRINGCagra.3356s0062.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17710.10.0homeodomain GLABROUS 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]