PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3356s0048.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 520aa    MW: 57964.2 Da    PI: 7.2386
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3356s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.13.8e-16741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Cagra.3356s0048.1.p  7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                         ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-11546No hitNo description
CDDcd002022.74E-16651No hitNo description
PfamPF003205.0E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.095740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139193.9E-10273374IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RADGDENDDH  60
HRFQRMKSIS LSNKNKETKM LKRKALDENI IIKRPLLEFS YGLKKAVLEE DVSNRSSSGS  120
AVSNSESCAQ FSSADGSELT GPSQSNAWDT TVPCKRRTCV GRPKSSSVEK LTKDLYNILQ  180
EQQSSCLSVS SEEDLLFENE MSMVSVEIGH GSVLMKNPHS FAREEESEAS SLSSIENKSS  240
ISEAYSHSVK RVEIGAERGS YYGGQAIKQE QFKRTKSQTE RVHVLGSHSS PLCSIDLKDV  300
FNCDEFIEQF TEEEQKKLMK LLPQIDSDNL PDSLRMMFES AQFKDNFSLL QQLIADGVFD  360
MSSSSGAKLE DSRAFKKLAL TDLNKSRLVE SYYLLKEREK ETGDSVTTTL QKSSNPNVPK  420
NIVTIKRRCE DQTQLKSESR GLMRSPKRVM KMKATHERKV LTENNVPCFS PRSLASVFAQ  480
EGGSAVFGYE GNCSSDQDLL LLDLPSNGSF PQAELLHQL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3356s0048.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0625620.0AY062562.1 Arabidopsis thaliana Unknown protein (Z97343.42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285659.10.0GATA transcription factor 26 isoform X1
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLR0F9D00.0R0F9D0_9BRAS; Uncharacterized protein
STRINGCagra.3356s0048.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.30.0GATA transcription factor 26