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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.3356s0041.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
ERF |
Protein Properties |
Length: 269aa MW: 29158.9 Da PI: 8.7855 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.3356s0041.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 62.4 | 9.7e-20 | 150 | 200 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g
Cagra.3356s0041.1.p 150 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAFRMRG 200
8********.***********9987..*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0001944 | Biological Process | vasculature development |
GO:0010200 | Biological Process | response to chitin |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0051301 | Biological Process | cell division |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 269 aa
Download sequence Send
to blast |
MSMMAGTQSD YAFLESIRRH LLGETEMRLS ESITSSVEQS CTTGNSVLKP VYGRNPSFGK 60 LYPCFTESWG DLPLKENDSE DMLVYGILND AFHGGWEPSS SSSDEDRSSF PAVKVESPES 120 FSFGAVDSVP AKKETSPVVP VAAAVAKGKH YRGVRQRPWG KFAAEIRDPA KNGARVWLGT 180 FETAEDAALA YDRAAFRMRG SRALLNFPLR VNSGEPDPVR IKSKRASSSE NGAPKKRRTV 240 AAGDGAGKGL TVKCEMVEVT RGDRLLVL*
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Functional Description ? help
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Source |
Description |
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB008103 | 0.0 | AB008103.1 Arabidopsis thaliana AtERF-1 mRNA for ethylene responsive element binding factor 1, complete cds. |
GenBank | AL161546 | 0.0 | AL161546.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46. |
GenBank | AY058174 | 0.0 | AY058174.1 Arabidopsis thaliana AT4g17500/dl4785w mRNA, complete cds. |
GenBank | AY062533 | 0.0 | AY062533.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. |
GenBank | BT002578 | 0.0 | BT002578.1 Arabidopsis thaliana Unknown protein (At4g17500) mRNA, complete cds. |
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
GenBank | Z97343 | 0.0 | Z97343.1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G17500.1 | 1e-141 | ethylene responsive element binding factor 1 |