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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.3356s0040.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
ERF |
Protein Properties |
Length: 309aa MW: 34665.1 Da PI: 5.2958 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.3356s0040.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 158 | 208 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr ++ +g+++AeIrdp + + +r++lg+f ta eAa+a+++a+ +l+g
Cagra.3356s0040.1.p 158 HYRGVRMRP-WGKFAAEIRDP---NrRGTRVWLGTFETAIEAARAYDKAAFRLRG 208
69*******.**********9...4334*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0000302 | Biological Process | response to reactive oxygen species |
GO:0001944 | Biological Process | vasculature development |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009644 | Biological Process | response to high light intensity |
GO:0010200 | Biological Process | response to chitin |
GO:0051301 | Biological Process | cell division |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MPSPTEASAL LLIKKYLLDE SSPLPIHAPT DRWMNQPDFS IFGSSGFASF DHTGFEFSNF 60 ETPKPEIIDL VTPKPEISDF EVKSEYPLES NDSFTFQSNP IVQSNRKPKT LKIAPPNRTE 120 WIQFATGNSK PEIIEFATGN RKPEIPVPPV VVAEEKWHYR GVRMRPWGKF AAEIRDPNRR 180 GTRVWLGTFE TAIEAARAYD KAAFRLRGSK AIVNFPLEVD KWNPRGEDGH GQNNKRKRDG 240 GEEEVTVAEK VLKTEESHDV TFGGVNVESA KSDLTAIDDW DLTEFLSMPL LSPLSPHPPF 300 GFPQLTVV*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL161546 | 1e-162 | AL161546.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46. |
GenBank | CP002687 | 1e-162 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
GenBank | Z97343 | 1e-162 | Z97343.1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G17490.1 | 1e-124 | ethylene responsive element binding factor 6 |