PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3262s0018.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 748aa    MW: 85184.3 Da    PI: 6.1371
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3262s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-14449493146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r+ WT+eEd++l  av ++G  +W ++a+ ++ gRt+ qc +rw k
  Cagra.3262s0018.1.p 449 RKEWTAEEDDQLRAAVDLFGETDWQSVANVLQ-GRTGPQCSNRWKK 493
                          789*****************************.***********98 PP
2Myb_DNA-binding49.31.1e-15502544144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                          +++W+ eEd++l+ av+++G+++W +Ia+ ++ gRt+ qc +rw
  Cagra.3262s0018.1.p 502 KQKWSSEEDKRLKVAVTLFGTKNWPKIAQFVP-GRTGTQCLERW 544
                          79******************************.*********** PP
3Myb_DNA-binding50.83.7e-16555597246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g+WT+eEd +l +a k++G   W+++a++m  gRt+ qc  rw +
  Cagra.3262s0018.1.p 555 GKWTKEEDAKLREAMKEHGHC-WSKVASYMS-GRTDSQCAKRWKS 597
                          79*****************99.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.542297390IPR017877Myb-like domain
SMARTSM0071716301392IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-4304320IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-4366402IPR009057Homeodomain-like
SuperFamilySSF466894.9E-10374440IPR009057Homeodomain-like
PROSITE profilePS500907.735391443IPR017877Myb-like domain
SMARTSM007170.062395445IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-9403455IPR009057Homeodomain-like
SuperFamilySSF466892.01E-17428497IPR009057Homeodomain-like
PROSITE profilePS5129421.027444499IPR017930Myb domain
SMARTSM007171.1E-13448497IPR001005SANT/Myb domain
PfamPF002496.7E-13449493IPR001005SANT/Myb domain
CDDcd001671.45E-10451495No hitNo description
Gene3DG3DSA:1.10.10.601.3E-15456497IPR009057Homeodomain-like
SuperFamilySSF466891.41E-28499595IPR009057Homeodomain-like
PROSITE profilePS5129414.919500548IPR017930Myb domain
SMARTSM007174.2E-14501550IPR001005SANT/Myb domain
PfamPF002491.1E-13502545IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-19503552IPR009057Homeodomain-like
CDDcd001676.30E-11504548No hitNo description
PROSITE profilePS5129423.97549603IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-19553598IPR009057Homeodomain-like
SMARTSM007171.3E-14553601IPR001005SANT/Myb domain
PfamPF002497.2E-15555598IPR001005SANT/Myb domain
CDDcd001671.49E-11556598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MSRREGLYEA DDDDNDDDED ISEDLEELSR ACIVSDDKRM PSDSENEDLE MIQSITSQLA  60
PTGLSVPSED LESEDEDFEM IRSIERDLAL SMDEDGASET LRVFLKRFSA YAKSDPEGTF  120
MNDVIRKNKK QVHALDNEPS TEILSRSNTC ESFPDHGRSV VTVPDSDTSG DHLETCQSEI  180
SSFPEAAKGF VNAIRKNRSY QSLLRKKLSE IEATIEQNEK HKKNVKIVKD FEASCKRITK  240
QALSQMKDPR VELISARKSE PASDRTEDND KKTSPLMLGP LENACVANYR MALEKYPVSV  300
DRRSWTSKEK ESLAKGLKQQ VQNALIHEAF ERSSDLEGSA DDVNTILEGI KNLEITPEMI  360
RQYLPKVNWD QLDIKNRSAA ECEAQWMSSE DPLINNGPWT VAEDNDIRLI AQNKGITDWL  420
DIAVSLGTNR TPFHCLARYQ RSLNPYVLRK EWTAEEDDQL RAAVDLFGET DWQSVANVLQ  480
GRTGPQCSNR WKKSLHPSRT KKQKWSSEED KRLKVAVTLF GTKNWPKIAQ FVPGRTGTQC  540
LERWGNSLDP KLKFGKWTKE EDAKLREAMK EHGHCWSKVA SYMSGRTDSQ CAKRWKSLYP  600
HLAHLRQEAR RLQRETTIGN FVDRESERPD LVVGDFLALA EVSLEPEPAL KKKRRARQKK  660
SADAECESEA VCAHTERQPK RRRKVSEICS RDVCRQENEN EDNVKEKKQR GKRTSVAETS  720
NNSSETTHCP QVNIGIQKLK PRRKVSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-313585979159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-313585979159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1650654KKKRR
2678684PKRRRKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3262s0018.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635186.10.0snRNA-activating protein complex subunit 4
TrEMBLD7MG960.0D7MG96_ARALL; Uncharacterized protein
STRINGCagra.3262s0018.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1