PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3262s0014.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 127aa    MW: 14966.2 Da    PI: 10.4661
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3262s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind613e-19121032100
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F +++y+++ed++ + +isw +++nsfv+++ eef++k +   F  s+f+ F   L  YgF+++k+ +++        e+ ++ F +g+ 
  Cagra.3262s0014.1.p  12 FHMRIYKVVEDPSSDPIISWGKDNNSFVIWNLEEFTRKNIVGNFNCSRFSEFRSELRYYGFRRIKKGSGE-------LEYGNEDFVRGEP 94 
                          7889****************************************************************99.......************* PP

                          XXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrk 100
                          e l+++  k
  Cagra.3262s0014.1.p  95 ERLKTMMIK 103
                          **9987654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-23797IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-258103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-219100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-1812100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-51235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-56375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MALNFPKGVS VFHMRIYKVV EDPSSDPIIS WGKDNNSFVI WNLEEFTRKN IVGNFNCSRF  60
SEFRSELRYY GFRRIKKGSG ELEYGNEDFV RGEPERLKTM MIKAWRKNKA KFKARKAAEE  120
MQRLQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3262s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284761.14e-77heat stress transcription factor A-1
TrEMBLR0GL959e-76R0GL95_9BRAS; Uncharacterized protein
STRINGCagra.3262s0014.1.p2e-88(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.13e-41HSF family protein