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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3262s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HSF | ||||||||
Protein Properties | Length: 134aa MW: 15800.2 Da PI: 10.1517 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 56.4 | 8.2e-18 | 13 | 105 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 F ++ye++ed++ + +isws+ +n fv++++ee ++ + F s+++ F+ L+ YgF++vk++++k eF+++ F +g+ Cagra.3262s0012.1.p 13 FYVEIYELVEDPSSDPIISWSKGNNGFVLCNQEERIRNNILLKFNCSKLSEFLSELKYYGFRRVKKRSGK-------LEFRNEDFVRGQP 95 8899**************************9877555555567*************************99.......************* PP XXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkk 101 e l+++ k+ Cagra.3262s0012.1.p 96 ERLKEMMLKS 105 ****987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.2E-31 | 9 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.8E-21 | 11 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.33E-22 | 12 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.7E-7 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.9E-17 | 13 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.7E-7 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MDQKYPNGLM GTFYVEIYEL VEDPSSDPII SWSKGNNGFV LCNQEERIRN NILLKFNCSK 60 LSEFLSELKY YGFRRVKKRS GKLEFRNEDF VRGQPERLKE MMLKSCRKHR AKFRAQQAAK 120 DAVDRLQLQR LQI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 79 | RRVKKRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.3262s0012.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493685 | 6e-98 | AB493685.1 Arabidopsis thaliana At4g19630 mRNA for hypothetical protein, partial cds, clone: RAAt4g19630. | |||
GenBank | AY133704 | 6e-98 | AY133704.1 Arabidopsis thaliana clone C103282 unknown protein (At4g19630) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010449325.2 | 8e-74 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | Q8L7H2 | 2e-59 | Q8L7H2_ARATH; Winged-helix DNA-binding transcription factor family protein | ||||
STRING | Cagra.3262s0012.1.p | 2e-94 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5067 | 14 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G19630.1 | 3e-64 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3262s0012.1.p |