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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cagra.3166s0054.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
NAC |
| Protein Properties |
Length: 367aa MW: 40222.2 Da PI: 6.4053 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.3166s0054.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 105.1 | 8.9e-33 | 58 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.a. 77
lp+G++F+Ptdee++ e+L++k+ + + + v ++v+i++++P++Lp v+++ ++++fF k++++y++g+rk+r +
Cagra.3166s0054.1.p 58 LPKGVKFEPTDEEVI-EHLEAKCGIDGlkphllI---QdficsVTQDVGINYTHPQNLP-GVSKDGTSVFFFNKTAHAYQNGQRKRRrVt 142
799************.99****877775566552...03444478999***********.66778899******************9545 PP
NAM 78 ....tk.sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
t+ s +W++tg++k+v++ +g ++g+kk++v+yk + k+ek++Wv+h+y+l
Cagra.3166s0054.1.p 143 ptslTDeSVRWHKTGQTKPVMV-NGVQKGCKKIMVLYKSarKGLKPEKSNWVLHQYHL 199
6555225888************.999***********6422556778*********98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MKTLARAWIV DGPWIARNVK NASVSSSLQI KDCGAYINCP NCSYPVDNSN VLPPWPGLPK 60
GVKFEPTDEE VIEHLEAKCG IDGLKPHLLI QDFICSVTQD VGINYTHPQN LPGVSKDGTS 120
VFFFNKTAHA YQNGQRKRRR VTPTSLTDES VRWHKTGQTK PVMVNGVQKG CKKIMVLYKS 180
ARKGLKPEKS NWVLHQYHLG TEEGEIGEFV VSKITYQKQK QWEKTIDESE SFGGRGGPST 240
PKTTTPTQAR PVISVDEDEI TTCDNTKMVL DSLAEGLGNI QEASVDSTSD KRAQQAGNLS 300
VSEDSLASKK VEASSTLVEK NPNYGNFDMG SGNFSVSDLE NAELGTLPDL LSLASEDSLL 360
NWLGRF*
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 135 | 139 | RKRRR |
| 2 | 136 | 140 | KRRRV |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL163792 | 1e-159 | AL163792.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project). |
| GenBank | AL163817 | 1e-159 | AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project). |
| GenBank | CP002688 | 1e-159 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Publications
? help Back to Top |
- Yi D, et al.
The Arabidopsis SIAMESE-RELATED cyclin-dependent kinase inhibitors SMR5 and SMR7 regulate the DNA damage checkpoint in response to reactive oxygen species.
Plant Cell, 2014. 26(1): p. 296-309
[PMID:24399300] - Biever JJ,Brinkman D,Gardner G
UV-B inhibition of hypocotyl growth in etiolated Arabidopsis thaliana seedlings is a consequence of cell cycle arrest initiated by photodimer accumulation.
J. Exp. Bot., 2014. 65(11): p. 2949-61
[PMID:24591052] - Hu Z,Cools T,Kalhorzadeh P,Heyman J,De Veylder L
Deficiency of the Arabidopsis helicase RTEL1 triggers a SOG1-dependent replication checkpoint in response to DNA cross-links.
Plant Cell, 2015. 27(1): p. 149-61
[PMID:25595823] - Chen P,Umeda M
DNA double-strand breaks induce the expression of flavin-containing monooxygenase and reduce root meristem size in Arabidopsis thaliana.
Genes Cells, 2015. 20(8): p. 636-46
[PMID:26033196] - Sjogren CA,Bolaris SC,Larsen PB
Aluminum-Dependent Terminal Differentiation of the Arabidopsis Root Tip Is Mediated through an ATR-, ALT2-, and SOG1-Regulated Transcriptional Response.
Plant Cell, 2015. 27(9): p. 2501-15
[PMID:26320227] - Yoshiyama KO
SOG1: a master regulator of the DNA damage response in plants.
Genes Genet. Syst., 2016. 90(4): p. 209-16
[PMID:26617076] - Weimer AK, et al.
The plant-specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis.
EMBO J., 2016. 35(19): p. 2068-2086
[PMID:27497297] - Davis OM,Ogita N,Inagaki S,Takahashi N,Umeda M
DNA damage inhibits lateral root formation by up-regulating cytokinin biosynthesis genes in Arabidopsis thaliana.
Genes Cells, 2016. 21(11): p. 1195-1208
[PMID:27658920] - Pedroza-García JA, et al.
Function of the Plant DNA Polymerase Epsilon in Replicative Stress Sensing, a Genetic Analysis.
Plant Physiol., 2017. 173(3): p. 1735-1749
[PMID:28153919] - Horvath BM, et al.
Arabidopsis RETINOBLASTOMA RELATED directly regulates DNA damage responses through functions beyond cell cycle control.
EMBO J., 2017. 36(9): p. 1261-1278
[PMID:28320736] - Sjogren CA,Larsen PB
SUV2, which encodes an ATR-related cell cycle checkpoint and putative plant ATRIP, is required for aluminium-dependent root growth inhibition in Arabidopsis.
Plant Cell Environ., 2017. 40(9): p. 1849-1860
[PMID:28556304] - Yoshiyama KO,Kaminoyama K,Sakamoto T,Kimura S
Increased Phosphorylation of Ser-Gln Sites on SUPPRESSOR OF GAMMA RESPONSE1 Strengthens the DNA Damage Response in Arabidopsis thaliana.
Plant Cell, 2017. 29(12): p. 3255-3268
[PMID:29208704] - Johnson RA, et al.
SUPPRESSOR OF GAMMA RESPONSE1 Links DNA Damage Response to Organ Regeneration.
Plant Physiol., 2018. 176(2): p. 1665-1675
[PMID:29222192] - Ogita N, et al.
Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis.
Plant J., 2018. 94(3): p. 439-453
[PMID:29430765] - Cao X, et al.
Roles of MSH2 and MSH6 in cadmium-induced G2/M checkpoint arrest in Arabidopsis roots.
Chemosphere, 2018. 201: p. 586-594
[PMID:29533809]
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