PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.30289s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 170aa    MW: 18472.3 Da    PI: 7.8418
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.30289s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.11.1e-27599196
                DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
                          +C +Ck+l+ +C++ Cv  p+fp+ +  + + vh++FGa nv+k+l++l   ere+a++sl+y Aear rdP++G++g+il++q+ l+ l+
  Cagra.30289s0001.1.p  5 PCGVCKILKITCEPTCVCKPHFPSGS-TRIQDVHQIFGAVNVHKILNSLGAAEREIAANSLCYAAEARRRDPIHGVHGMILHYQSILNDLE 94
                          7**********************987.89***********************************************************999 PP

                DUF260 92 aelal 96
                          +++ +
  Cagra.30289s0001.1.p 95 KDIIA 99
                          98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.2224104IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-26597IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MASKPCGVCK ILKITCEPTC VCKPHFPSGS TRIQDVHQIF GAVNVHKILN SLGAAEREIA  60
ANSLCYAAEA RRRDPIHGVH GMILHYQSIL NDLEKDIIAA MNTLATTVGS DQVPKYFDIP  120
IPNDFLATTA SLDSYIEKIK SLTTVEKNQL MQFWKRADGA SSSAGPSTAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2121048111LOB family transfactor Ramosa2.1
5ly0_B2e-2121048111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.30289s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545910.0AC254591.1 Capsella rubella clone CAP08-M12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285857.11e-124LOB domain-containing protein 32
SwissprotO496512e-61LBD32_ARATH; LOB domain-containing protein 32
TrEMBLR0H2631e-123R0H263_9BRAS; Uncharacterized protein
STRINGCagra.30289s0001.1.p1e-125(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.18e-64LOB domain-containing protein 32