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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.29993s0001.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
ERF |
| Protein Properties |
Length: 167aa MW: 17885.2 Da PI: 10.0201 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.29993s0001.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 59.3 | 9.4e-19 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
ykG+r +k +g+WvAeIr+p +kr r++lg++ t+e Aa+a++ a +l+g
Cagra.29993s0001.1.p 27 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 76
69*****99.**********9...336*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 167 aa
Download sequence Send
to blast |
METGAAVTAT VTAATMGIGT RKRDLKPYKG IRMRKWGKWV AEIREPNKRS RIWLGSYSTP 60
EAAARAYDTA VFYLRGPSAR VNFPELLAGL GGGRGGGGDL TAAYIRRKAA EVGAQVDALG 120
ATVVVRSGGD YEDCRGGGNG LLDRVDLNKL PDPENSDDDD VWVKRR*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC002391 | 1e-96 | AC002391.3 Arabidopsis thaliana chromosome 2 clone T20D16 map CIC06C07, complete sequence. |
| GenBank | AK118495 | 1e-96 | AK118495.1 Arabidopsis thaliana At2g23340 mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL19-73-B20. |
| GenBank | BT003741 | 1e-96 | BT003741.1 Arabidopsis thaliana At2g23340 mRNA, complete cds. |
| GenBank | CP002685 | 1e-96 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
