PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2997s0002.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 222aa    MW: 25897.6 Da    PI: 9.4036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2997s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.5e-12118159351
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                           +GV++ k + +W A I++      +++++lg+f + eeAa+++++a+ 
  Cagra.2997s0002.2.p 118 MRGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDRAAF 159
                          79**96.5.7*********6.....6********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.70495172IPR001471AP2/ERF domain
PfamPF008471.7E-6117160IPR001471AP2/ERF domain
SMARTSM003804.0E-5117174IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-9118162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-8119163IPR001471AP2/ERF domain
CDDcd000182.14E-12119170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MVSLRRRRLL GLCCGPNGYV TPLPFLTAEE MITGIPNPNA RVAYTPGQAE KVDEPKEEEN  60
MSVEESGRRT RSKHMEFRSE YSDMSPVDSD SISPKYQPLK RRKRHRRKHV HNQEPCLMRG  120
VYYKNMKWQA AIKVEKRQIH LGTFSSQEEA ARLYDRAAFM CGREPNFALS EEVIRELKQQ  180
SWEEFLACTR RTITNKKPKR RIEQEDKEIN ASMLHCPPQE E*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2997s0002.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216240.0AK221624.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-94-D09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284477.21e-136ethylene-responsive transcription factor-like protein At4g13040 isoform X2
SwissprotQ56XP91e-116ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLR0GYI91e-135R0GYI9_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.2997s0002.1.p1e-137(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-116ERF family protein