PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cagra.2968s0004.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C2H2

Protein Properties

Length: 276aa MW: 31890.6 Da PI: 8.7856

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2968s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.8e-06	221	243	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ +F ++ + H+ +H Cagra.2968s0004.1.p 221 YTCPKCNNVFDTSQKFAAHMLSH 243 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.98E-5	209	245	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.2E-4	210	244	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0049	221	243	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.411	221	248	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	223	243	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MFSTPNMFNI YSDDSINHHE MLHNSQMVQS TFDRMNHEIL FASPLSFSYP QNSHASSPPF 60 HYLMRGNFDS VSGAENSHSS LSLHLTQVPF NQTITNRYTT IIPTNTQFQY DTECAKRSMD 120 SKINRNYVSH PPNFLDSQRE VLSPTPLSVV YPHQDFDDLR LSDMVSMPSK GNHIPQDSQF 180 MKKILKPKIT YYVDSDEDEK SDDDQYDGRT HSISSKKYGP YTCPKCNNVF DTSQKFAAHM 240 LSHYKSENIK EKARRLRARN KNRYCKLTTS LKRSK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2968s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295940.2	1e-142	uncharacterized protein LOC17888798
TrEMBL	R0HXM8	0.0	R0HXM8_9BRAS; Uncharacterized protein
STRING	Cagra.2968s0004.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1924	19	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42640.1	1e-68	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Cagra.2968s0004.1.p