PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2961s0042.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SRS
Protein Properties Length: 175aa    MW: 19989.8 Da    PI: 9.4156
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2961s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70295.21.4e-29660559
               DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaa 59
                         + +C+dCGnqakk+C+++RCRtCCks++f+C+th+kstWvpa++r+++q q++ +
  Cagra.2961s0042.1.p  6 GRRCEDCGNQAKKECVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHHQPQQQPQ 60
                         569*********************************************8777654 PP

2DUF70276.19.7e-246712695154
               DUF702  95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                          + +  +++ ++P+ev+ +a fr v+vss+ dg+e++aYqt+v+igGh+f+GiL+dqGl++
  Cagra.2961s0042.1.p  67 SVQIRTTQGHFPAEVNFPADFRGVKVSSIHDGKEQYAYQTTVNIGGHIFRGILHDQGLDK 126
                          3445566677***********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.2E-24658IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.8E-28950IPR006510Zinc finger, lateral root primordium type 1
PfamPF051425.3E-2167125IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.9E-2676124IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MMMIMGRRCE DCGNQAKKEC VYMRCRTCCK SKAFHCQTHI KSTWVPAYRR SHHQPQQQPQ  60
PLFNTSSVQI RTTQGHFPAE VNFPADFRGV KVSSIHDGKE QYAYQTTVNI GGHIFRGILH  120
DQGLDKVMVD HHHQNNTSRS HRQETLLPPS TSSCPLMITT SPFTNFMSDT VLRR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2961s0042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640715.11e-113protein SHI RELATED SEQUENCE 3
SwissprotQ9SJT86e-90SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLR0HHW61e-129R0HHW6_9BRAS; Uncharacterized protein
STRINGCagra.2961s0042.1.p1e-130(Capsella grandiflora)
STRINGXP_006296386.11e-130(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.13e-89SHI-related sequence3