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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.2961s0042.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
SRS |
Protein Properties |
Length: 175aa MW: 19989.8 Da PI: 9.4156 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.2961s0042.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 95.2 | 1.4e-29 | 6 | 60 | 5 | 59 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaa 59
+ +C+dCGnqakk+C+++RCRtCCks++f+C+th+kstWvpa++r+++q q++ +
Cagra.2961s0042.1.p 6 GRRCEDCGNQAKKECVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHHQPQQQPQ 60
569*********************************************8777654 PP
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2 | DUF702 | 76.1 | 9.7e-24 | 67 | 126 | 95 | 154 |
DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ + +++ ++P+ev+ +a fr v+vss+ dg+e++aYqt+v+igGh+f+GiL+dqGl++
Cagra.2961s0042.1.p 67 SVQIRTTQGHFPAEVNFPADFRGVKVSSIHDGKEQYAYQTTVNIGGHIFRGILHDQGLDK 126
3445566677***********************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 175 aa
Download sequence Send
to blast |
MMMIMGRRCE DCGNQAKKEC VYMRCRTCCK SKAFHCQTHI KSTWVPAYRR SHHQPQQQPQ 60 PLFNTSSVQI RTTQGHFPAE VNFPADFRGV KVSSIHDGKE QYAYQTTVNI GGHIFRGILH 120 DQGLDKVMVD HHHQNNTSRS HRQETLLPPS TSSCPLMITT SPFTNFMSDT VLRR*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |