PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2925s0018.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 347aa    MW: 39173.3 Da    PI: 8.9943
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2925s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.64.1e-56181431128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL+kkv +  +++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk
  Cagra.2925s0018.1.p  18 LPPGFRFHPTDEELISHYLHKKVLDIAFSA-KAIGEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDK 106
                          79**************************99.88***************99999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++ +++lvg+kktLvfy+grapkg kt+Wvmheyrl
  Cagra.2925s0018.1.p 107 EIYR-GKSLVGMKKTLVFYRGRAPKGLKTNWVMHEYRL 143
                          ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-6314177IPR003441NAC domain
PROSITE profilePS5100559.09918177IPR003441NAC domain
PfamPF023652.0E-2919143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
METFGGFHYK EDDEQMDLPP GFRFHPTDEE LISHYLHKKV LDIAFSAKAI GEVDLNKAEP  60
WELPYKAKMG EKEWYFFCVR DRKYPTGLRT NRATQAGYWK ATGKDKEIYR GKSLVGMKKT  120
LVFYRGRAPK GLKTNWVMHE YRLDGKLSAH NLPKTAKFLG FGSICQNEWV ICRVFHKTAG  180
GKKIPISTLI RIGSYGTGSS LPPLTDSSTY SDKTKTEPVY VPCFSNQAET RGTTILNCFN  240
NSSLSSIQPD FLQMIPLYQP QYSLNVSDNL QGSSPALTQD QSALQAMMEN NKRQSFKTLN  300
ISQETGAASN TDNTSSVFEF GRKRFDHQEV PSSSAGPIDL EPFWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-551518317174NAC domain-containing protein 19
3swm_B3e-551518317174NAC domain-containing protein 19
3swm_C3e-551518317174NAC domain-containing protein 19
3swm_D3e-551518317174NAC domain-containing protein 19
3swp_A3e-551518317174NAC domain-containing protein 19
3swp_B3e-551518317174NAC domain-containing protein 19
3swp_C3e-551518317174NAC domain-containing protein 19
3swp_D3e-551518317174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00496DAPTransfer from AT5G07680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2925s0018.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507130.0AY350713.1 Capsella rubella clone BAC Cr33L6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288140.10.0NAC domain-containing protein 79
SwissprotQ9FLR30.0NAC79_ARATH; NAC domain-containing protein 79
TrEMBLR0HBK30.0R0HBK3_9BRAS; Uncharacterized protein
STRINGCagra.2925s0018.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.10.0NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]