 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cagra.2848s0032.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
C2H2 |
| Protein Properties |
Length: 202aa MW: 22875.5 Da PI: 8.7761 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.2848s0032.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14 | 0.00015 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C + F ++ L H++ H
Cagra.2848s0032.1.p 103 FSCNYCQRKFYSSQALGGHQNAH 125
89******************988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MSFEQTYAPL HLKYNAPQAQ TLQTNISHLS NFYFSLSLSR FLFLSLSKHR VMDFQPNTSL 60
RLSLPSYKNH QLNLELVLEP SSMSSSSSSS TNSSSCLEQP RVFSCNYCQR KFYSSQALGG 120
HQNAHKLERT LAKKSRELFR SSTTVDSDQP YPFSGRFELY GRGYEGFVES GGSRDFSARR 180
VPESGLDQDQ EMSHLDLSLR L*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB011482 | 0.0 | AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2. |
| GenBank | ATHZFPB | 0.0 | L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
