PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2848s0022.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | AP2 | ||||||||
Protein Properties | Length: 554aa MW: 59872.7 Da PI: 7.6219 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.9 | 3.3e-15 | 199 | 258 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Cagra.2848s0022.1.p 199 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 258 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 46.3 | 1.1e-14 | 303 | 352 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Cagra.2848s0022.1.p 303 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 352 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.55E-22 | 199 | 268 | No hit | No description |
Pfam | PF00847 | 3.2E-12 | 199 | 258 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-17 | 199 | 268 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-30 | 200 | 272 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.23 | 200 | 266 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-16 | 200 | 267 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 201 | 212 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.16E-24 | 301 | 362 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 301 | 362 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.7E-33 | 302 | 366 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 302 | 360 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-18 | 302 | 360 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 303 | 352 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 342 | 362 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MKNNNNKSSS SSSYDSSLSP SSSSSSHQNW LSFSLSNNNN FNSSSNPNLN SSTSDHQHPH 60 PSHLSLFQAF STSPVERQDG SPGVSTGDAT AVLSSYPGGP KLENFLGGGA ATRPMQQVQS 120 LGGVIFSSDL QPSLHPPSAA EIYDAELKSI AASFLGNYSG GHSTEVSSAH KQQQQNPLVV 180 SEASPTPKKT VESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQVYLGGYD 240 KEEKAARAYD LAALKYWGPT TTTNFPISNY ESELEEMKHM TRQEFVASLR RKSSGFSRGA 300 SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD 360 ISRYDVKSIA SCNLPVGGLM PKSSAATADK TTVDLSPSEP PSLTTPSLTF DVATPVHDHG 420 TFYHTGIPIK PDPADHYWSN VFGFQANPKA EIRPIAAFGS DLHNPSPGYA IMPIMQEGEN 480 NFGGSYVGSE VYNNHSAASS PVSAIPLSST TTMGNGNEGY GGNINWISNN ISNSYQNAKS 540 NLSVLQTPVF GLE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2848s0022.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY585685 | 0.0 | AY585685.1 Arabidopsis thaliana clone at5g57390 AP2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280263.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 0.0 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | R0EWC3 | 0.0 | R0EWC3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2848s0022.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11583 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 0.0 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2848s0022.1.p |
Publications ? help Back to Top | |||
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