PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2848s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 138aa    MW: 16354.7 Da    PI: 9.1121
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2848s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind61.61.9e-191799292
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
         HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
                         F + ly++++d +++++isws+ng+sfvv++e+ef ++ Lp++F+ ++++ F+  L  YgF+kv+d++k         e++ + F +g+ e
  Cagra.2848s0007.1.p 17 FPEILYDVVDDVSTDSIISWSQNGKSFVVWNESEFISDFLPRFFQRRELSVFLARLYCYGFTKVSDDDKF--------EYASHCFLRGQPE 99
                         66779*************************************************************9964........8888888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.4E-1512105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-2313100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.25E-1916100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-81740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-1917100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-85567IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-86880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDRGKKRSRE GRRSYFFPEI LYDVVDDVST DSIISWSQNG KSFVVWNESE FISDFLPRFF  60
QRRELSVFLA RLYCYGFTKV SDDDKFEYAS HCFLRGQPEL TAPRSFVVTI PPEMPILMES  120
LKQRVLALKN NKDRLRLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-132110033122Heat shock factor protein 1
5d5v_B1e-132110033122Heat shock factor protein 1
5d5v_D1e-132110033122Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2848s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477037.15e-40PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ401522e-20HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A087GCZ83e-35A0A087GCZ8_ARAAL; Uncharacterized protein
STRINGCagra.2848s0007.1.p4e-98(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-14heat shock transcription factor A4A
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]