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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.2834s0001.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
MIKC_MADS |
Protein Properties |
Length: 232aa MW: 25951.8 Da PI: 10.1852 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.2834s0001.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 91.1 | 5.4e-29 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
rienk++rqvtfskRr+g+ KKA+E+SvLCda+va+i+fs++gkl+eys
Cagra.2834s0001.1.p 10 RIENKIRRQVTFSKRRAGLVKKAQEISVLCDADVALIVFSPKGKLFEYS 58
8***********************************************8 PP
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2 | K-box | 74.8 | 2.5e-25 | 88 | 170 | 14 | 95 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe.enkaLr 95
+ ++++e ++L + i+ +qr++Rhl+Ge+++ Ls++eLq Le qL+++lkk Rs+Kn+l++e+i +lqkk + ++ e ++Lr
Cagra.2834s0001.1.p 88 QGECSTECSRLLRMIDVMQRSIRHLKGEEVDALSIRELQGLEMQLDTALKKTRSRKNQLMIESIAQLQKKAGQREDfEPQNLR 170
467899****************************************************************8665542445555 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 30.572 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.4E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.21E-39 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.66E-31 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-21 | 87 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.227 | 88 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MGRGRVQLRR IENKIRRQVT FSKRRAGLVK KAQEISVLCD ADVALIVFSP KGKLFEYSAG 60 SSMERILDRY ERSSYAGQET PTPNLDSQGE CSTECSRLLR MIDVMQRSIR HLKGEEVDAL 120 SIRELQGLEM QLDTALKKTR SRKNQLMIES IAQLQKKAGQ REDFEPQNLR HDLATPPCAS 180 PQALPRPISP PPPISFGETS QRNGVEGVAA GTLIRNTNTT LPHWMPRLTG E*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY141238 | 1e-167 | AY141238.1 Arabidopsis thaliana MADS-box protein AGL79 mRNA, complete cds. |