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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.27859s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 124aa MW: 14330.5 Da PI: 6.5305 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.7 | 7.4e-12 | 14 | 103 | 3 | 83 |
EE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 k+lt+ dv ++grl lpk+ + + +++ +++++l + d +++rs++v l+ r+ ++ yvl++GW+ ++ +LkegD + + Cagra.27859s0001.1.p 14 KTLTRTDVDQHGRLLLPKSQVLTVlqkmnnvtQESLQNGIELEVLDmTKNRSYSVILKSRNAPNDYVLATGWSTLKHSLELKEGDNIKL 102 89******************999999888777333348899999998889***********************************9988 PP E CS B3 83 k 83 + Cagra.27859s0001.1.p 103 Y 103 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-13 | 10 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-15 | 10 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.62E-15 | 11 | 116 | No hit | No description |
SMART | SM01019 | 6.4E-9 | 12 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-8 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MENFKIDGDM IISKTLTRTD VDQHGRLLLP KSQVLTVLQK MNNVTQESLQ NGIELEVLDM 60 TKNRSYSVIL KSRNAPNDYV LATGWSTLKH SLELKEGDNI KLYWDYLNYK FIILNFEYSL 120 IPF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.27859s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296022.1 | 6e-66 | putative B3 domain-containing protein At2g21920 | ||||
Swissprot | Q9SJ07 | 3e-64 | Y2192_ARATH; Putative B3 domain-containing protein At2g21920 | ||||
TrEMBL | R0G129 | 1e-82 | R0G129_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.27859s0001.1.p | 2e-85 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15428 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 9e-15 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.27859s0001.1.p |