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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.27691s0001.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
NAC |
Protein Properties |
Length: 208aa MW: 23940.8 Da PI: 9.9197 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.27691s0001.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 180.8 | 3.4e-56 | 21 | 147 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
lppGfrFhPtdeel+++yL++kv + ++ +i evd++kvePwdLp ++k +ekewyfF+ +d+ky+tg+r+nratk+gyWkatgkd
Cagra.27691s0001.1.p 21 LPPGFRFHPTDEELITHYLRPKVLNPFFSS-LAIGEVDLNKVEPWDLPWMAKIGEKEWYFFCVKDRKYPTGSRTNRATKAGYWKATGKD 108
79**********************999888.67***************888899*********************************** PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
k++++ +++lvg+kktLvfykgrapkg+kt+Wvmheyrle
Cagra.27691s0001.1.p 109 KAIFK-GKTLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLE 147
****9.999*****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 208 aa
Download sequence Send
to blast |
MDYKVSRIRE IVEEDSDKID LPPGFRFHPT DEELITHYLR PKVLNPFFSS LAIGEVDLNK 60 VEPWDLPWMA KIGEKEWYFF CVKDRKYPTG SRTNRATKAG YWKATGKDKA IFKGKTLVGM 120 KKTLVFYKGR APKGVKTNWV MHEYRLEGEF AIDDLPKTAK NECVISRVFH KRADGTKMHI 180 SGLMFGSGVN KFEPVGLPPL MDSSLYLK
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 4e-51 | 18 | 177 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-51 | 18 | 177 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-51 | 18 | 177 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-51 | 18 | 177 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-51 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-51 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-51 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-51 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-51 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-51 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-51 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-51 | 18 | 177 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-51 | 18 | 177 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-51 | 18 | 177 | 14 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY062638 | 1e-170 | AY062638.1 Arabidopsis thaliana Unknown protein (MRI12.1) mRNA, complete cds. |
GenBank | BT008716 | 1e-170 | BT008716.1 Arabidopsis thaliana At3g29035 gene, complete cds. |