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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2662s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 29843.3 Da PI: 7.176 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.3e-20 | 92 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa a+++a++k++g Cagra.2662s0009.1.p 92 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDEAALKFKG 141 7********.**********93....36************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-33 | 91 | 150 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-37 | 92 | 155 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.32E-20 | 92 | 150 | No hit | No description |
PROSITE profile | PS51032 | 24.948 | 92 | 149 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.4E-14 | 92 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-22 | 92 | 150 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.7E-11 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MANQRNYGKR PYRADESDEK KQGDDDDENI FPFFSARSQY DMRAMVSALT QVIGNQSSSH 60 ENNQHQPVLY NQQDPNQPIP PTQDQGVLRK RHYRGVRQRP WGKWAAEIRD PQKAARVWLG 120 TFETAEAAAL AYDEAALKFK GSKAKLNFPE RAQLASNTSS TITGPPNYYS SNNQIYYSNP 180 QTNPQNIPYY NQYYYNQYLH QGGNSSNDAL SYSLAGGETG GSMYNHQTLS TTTSSSSGGT 240 SRQPEEQDYA RYLHFGDSSP PNSGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-26 | 91 | 151 | 1 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator of the phytosulfokine PSK5 peptide hormone. Binds to the GCC-box pathogenesis-related promoter element. Rate-limiting factor of quiescent center cell division active when surrounding stem cells are damaged. Is a proteolytic target of APC/C-FZR1 complex. {ECO:0000269|PubMed:24158907}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00495 | DAP | Transfer from AT5G07310 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2662s0009.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by brassinosteroid, but not regulated by ethylene. {ECO:0000269|PubMed:24158907}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254592 | 0.0 | AC254592.1 Capsella rubella clone CAP08-D18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289257.1 | 1e-161 | ethylene-responsive transcription factor ERF115 | ||||
Swissprot | Q9LY29 | 1e-149 | EF115_ARATH; Ethylene-responsive transcription factor ERF115 | ||||
TrEMBL | R0HAX5 | 1e-160 | R0HAX5_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2662s0009.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5292 | 18 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07310.1 | 1e-125 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2662s0009.1.p |